FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.608e-33
Identity = 77/182 (42.31%), Postives = 119/182 (65.38%), Query Frame = 1
Query:  142 QTLDILGERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLV----DDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            Q L    + + G+  R  + +   A+ ++VKS+LGP G+DK+L+    +  G + +TNDGATILK + V++PAAKVLV+++  QD EVGDGTTSV ++AAELLK A  LV  +IHP +IISGYR A+  A + + +K +++     +D L+  A+T++  K++    + FA L V+AV  +K
Sbjct:    5 QILKDNAQEERGESARLSSFVGAIAIGDLVKSTLGPKGMDKILISGNPESAGGIKVTNDGATILKSIGVDNPAAKVLVDMSMTQDHEVGDGTTSVTVLAAELLKEAEKLVNQRIHPQTIISGYRRALGIAQESL-KKSSIESGDNIRDDLLKIARTTLGSKILSQHKEHFAQLAVDAVLRLK 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 64/175 (36.57%), Postives = 116/175 (66.29%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTNH 687
            +R++G+ V+ +N+ A +A+A+++++ LGP  + KML+D +G + +TNDG  IL+ + V+HPAAK ++E+A  QD EVGDGTTSV+++A E+L  A   ++ +IHPT II  YR A+ +   ++  +L+++++   K  + +  K  +  K IG  SD    + ++AV+ V ++ +
Sbjct:   16 KRESGRKVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREALEDIVGHLQSQLSIQLDVKDKAKMADVVKACVGTKFIGKWSDLAVKIALDAVETVTLSEN 190          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_TAKRU (T-complex protein 1 subunit delta OS=Takifugu rubripes GN=cct4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 76/170 (44.71%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ V++SLGP G+DKM+ D+ GDVTITNDGATILK ++V HP+AK+LVEL++ QD E GDGTTSVV++A  LL   N L++  IHPT I   ++ A+ +  + V   ++  V+   +++L+N A TS+  K++   S   A + V+AV  V
Sbjct:   23 DRDKPAQIRYSNISAAKAVADAVRTSLGPKGMDKMIQDEKGDVTITNDGATILKQMQVLHPSAKMLVELSKAQDIEAGDGTTSVVVIAGALLDSCNRLLQRGIHPTIISESFQKAVDKGVE-VLTAMSQPVQLGDRETLLNSATTSLCSKVVSQYSSLLAPMSVDAVMRV 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 140.969 bits (354), Expect = 5.811e-33
Identity = 74/170 (43.53%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V HPAA++LVEL++ QD E GDGTTSVVI+A  LL     L++  IHPT I   ++ A+ +  + + + ++  VE   +++L+N A TS++ K++   S   + + V AV  V
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTD-MSRPVELSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 76/170 (44.71%), Postives = 109/170 (64.12%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G D    +++A + VANIV++SLGP GLDK+L+   G++T+TNDGATIL  +EVEH  AK+LV+L++ QD E+GDGTT VV++A  LL++A  L+   IHP  I  GY  A + A K+++     V        +L   AKTS+  K++    D FAN+ V+AV +V
Sbjct:   29 RLHGIDAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVVDFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSV 198          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.912e-33
Identity = 73/158 (46.20%), Postives = 106/158 (67.09%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQ 666
            N+ AC A+ + V+++LGP G+DK++      VTI+NDGAT++K+L++ HPAA+ LV++A+ QD EVGDGTTSVVI+A E LK A   +   IHP  II  +R A   A + + E  + +K E + ++ L  CA TSM+ KLI     FF+ +VV+AVQ
Sbjct:   28 NINACCAIVDTVRTTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIKPENM-REFLEKCASTSMNSKLIASHKQFFSKMVVDAVQ 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.912e-33
Identity = 77/172 (44.77%), Postives = 110/172 (63.95%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKY---VNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G +    ++MA +AVAN +++SLGP GLDKM+VD  GDVTITNDGATIL M++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  GY  A R A ++   +++K+ V +     + L+  AKT++  K+I       A + V AV  V
Sbjct:   27 RLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDIN--NPEPLIQTAKTTLGSKVINSCHRQMAEIAVNAVLTV 196          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 75/170 (44.12%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G +    ++MA +AVAN +++SLGP GLDKM+VD  GDVT+TNDGATIL M++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  GY  A R A +++++   +V V+    + L+  AKT++  K++       A + V AV  V
Sbjct:   27 RLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV 196          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 75/170 (44.12%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G +    ++MA +AVAN +++SLGP GLDKM+VD  GDVT+TNDGATIL M++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  GY  A R A +++++   +V V+    + L+  AKT++  K++       A + V AV  V
Sbjct:   27 RLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV 196          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 75/170 (44.12%), Postives = 110/170 (64.71%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNE-KLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G +    ++MA +AVAN +++SLGP GLDKM+VD  GDVT+TNDGATIL M++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  GY  A R A +++++   +V V+    + L+  AKT++  K++       A + V AV  V
Sbjct:   27 RLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARVAIEHLDKISDSVLVDIKDTEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV 196          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPB_CAEEL2.608e-3342.31T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPG_DROME4.449e-3336.57T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPD_TAKRU5.811e-3344.71T-complex protein 1 subunit delta OS=Takifugu rubr... [more]
TCPD_HUMAN5.811e-3343.53T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPE_SCHPO7.589e-3344.71T-complex protein 1 subunit epsilon OS=Schizosacch... [more]
TCPH_DICDI9.912e-3346.20T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPE_MOUSE9.912e-3344.77T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPE_PONAB1.295e-3244.12T-complex protein 1 subunit epsilon OS=Pongo abeli... [more]
TCPE_MACFA1.295e-3244.12T-complex protein 1 subunit epsilon OS=Macaca fasc... [more]
TCPE_HUMAN1.295e-3244.12T-complex protein 1 subunit epsilon OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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