FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 73/170 (42.94%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V HPAA++LVEL++ QD E GDGTTSVVI+A  LL     L++  IHPT I   ++ A+ +  + + + ++  V+   +++L+N A TS++ K++   S   + + V AV  V
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTD-MSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 1.295e-32
Identity = 73/170 (42.94%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V HPAA++LVEL++ QD E GDGTTSVVI+A  LL     L++  IHPT I   ++ A+ +  + + + ++  V+   +++L+N A TS++ K++   S   + + V AV  V
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGLEILTD-MSRPVQLSDRETLLNSATTSLNSKVVSQYSSLLSPMSVNAVMKV 194          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 73/170 (42.94%), Postives = 113/170 (66.47%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R  G +    +++A +AVAN +++SLGP GLDKMLV   GDVTITNDGATI++ ++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  G+ LA ++A + + + ++ K     ++ LV  A+TS+  K++      FA + V+AV +V
Sbjct:   27 KRITGVEAVKSHILAARAVANTLRTSLGPRGLDKMLVSPDGDVTITNDGATIMEKMDVQHHVAKLMVELSKSQDHEIGDGTTGVVVLAGALLEEAEKLIDRGIHPIKIADGFDLACKKALETL-DSISDKFPVENRERLVETAQTSLGSKIVNRSLRQFAEIAVDAVLSV 195          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 74/170 (43.53%), Postives = 111/170 (65.29%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V HPAA++LVEL++ QD E GDGTTSVVI+A  LL     L++  IHPT I   ++ A+ +  + + + ++  VE   +++L+N A TS++ K+    S   + + V AV  V
Sbjct:   26 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTD-MSRPVELSDRETLLNSATTSLNSKVASQYSSLLSPMSVNAVMKV 194          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 1.691e-32
Identity = 73/170 (42.94%), Postives = 112/170 (65.88%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            +R     +R  N+ A +AVA+ +++SLGP G+DKM+ D  GDVTITNDGATILK ++V HPAA++LVEL++ QD E GDGTTSVVI+A  LL     L++  IHPT I   ++ A+ +  + + + ++   E   +++L+N A TS++ K++   S   + + V+AV  V
Sbjct:   29 DRDKPAQIRFSNISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEKGIEILTD-MSRPEELSDRETLLNSAATSLNSKVVSQYSSLLSPMSVDAVMKV 197          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_BOVIN (T-complex protein 1 subunit gamma OS=Bos taurus GN=CCT3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 64/171 (37.43%), Postives = 118/171 (69.01%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            +R++G+ V++ N+ A + +A+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HPAAK ++E++  QD EVGDGTTSV+I+A E+L  A   +  ++HPT +IS YR A+ +    + +K+++ V+   +D+++N   +S++ K+I   S    N+ ++AV+ V+
Sbjct:   15 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL-KKISIPVDTSNRDTMLNIINSSITTKVISRWSSLACNIALDAVKTVQ 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 76/171 (44.44%), Postives = 111/171 (64.91%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLA--VKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G +    ++MA +AVAN +++SLGP GLDKM+VD  GDVT+TNDGATIL M++V+H  AK++VEL++ QD E+GDGTT VV++A  LL+ A  L+   IHP  I  GY  A R A +++ +K++  V V+    + L+  AKT++  K++       A + V AV  V
Sbjct:   27 RLMGLEALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHL-DKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAVNAVLTV 196          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: THS3_HALVO (Thermosome subunit 3 OS=Halobacterium volcanii GN=cct3 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.766e-32
Identity = 82/181 (45.30%), Postives = 116/181 (64.09%), Query Frame = 1
Query:  142 QTLDILGE---RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGG-DSDFFANLVVEAVQAV 672
            Q L IL E   R  G+  +  N+ A +AVA  V+++LGP G+DKMLVD  G+V ITNDGATIL+ +++EHPAA++LVE+++ Q+ EVGDGTT+  ++  ELL  A DL+ + +HPT I+ GY  A R A   +++   V    L  D L   A++SM+ K  G   +D  A  VV+AVQ V
Sbjct:    7 QPLYILAEGTNRTHGRSAQDSNIRAGKAVAEAVRTTLGPRGMDKMLVDSSGEVVITNDGATILEKMDIEHPAAQMLVEVSQTQEEEVGDGTTTAAVLTGELLAHAEDLLDDDLHPTVIVEGYTEAARIAQDAIDD--MVLDVTLDDDLLRKVAESSMTGKGTGDVTADVLAKHVVKAVQMV 185          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPH_YEAST (T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae GN=CCT7 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 76/159 (47.80%), Postives = 105/159 (66.04%), Query Frame = 1
Query:  196 NVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKV---EKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            N+ AC AV   +K +LGP+G D ++V      TI+NDGATILK+L+V HPAAK LV+++  QD EVGDGTTSV I+A EL+K A   +   I    I+ GYR A+  A + +NE LAV +   +  G++ L  CA+T+MS KLI  ++DFF  + V+AV
Sbjct:   29 NINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINE-LAVDITSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAV 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_SCHPO (T-complex protein 1 subunit gamma OS=Schizosaccharomyces pombe GN=cct3 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 70/176 (39.77%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  160 GERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVKMTNH 687
            G RQ G   +  N+ A +AVA+++++ LGP  + KML+D +G V +TNDG  IL+ +EV HPAAK ++ELA  QD EVGDGTTSV+I+A E+L  A+ L+  KIHP  +I  ++ A+ +A   ++E + + V       +    +T +  KL+   SD   +L + AV+ V  T++
Sbjct:   12 GNRQVGHKAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDE-ITLPVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVASTSN 186          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPD_RAT1.295e-3242.94T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_MOUSE1.295e-3242.94T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPE_CAEEL1.691e-3242.94T-complex protein 1 subunit epsilon OS=Caenorhabdi... [more]
TCPD_PONAB1.691e-3243.53T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_BOVIN1.691e-3242.94T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPG_BOVIN2.884e-3237.43T-complex protein 1 subunit gamma OS=Bos taurus GN... [more]
TCPE_RAT2.884e-3244.44T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
THS3_HALVO3.766e-3245.30Thermosome subunit 3 OS=Halobacterium volcanii GN=... [more]
TCPH_YEAST4.919e-3247.80T-complex protein 1 subunit eta OS=Saccharomyces c... [more]
TCPG_SCHPO4.919e-3239.77T-complex protein 1 subunit gamma OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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