FC921560

Overview
NameFC921560
Unique NameFC921560
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPB_MACFA (T-complex protein 1 subunit beta OS=Macaca fascicularis GN=CCT2 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVT--ITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD------SLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            + +  +  R  + +   A+ ++VKS+LGP G+DK+L+    D +  +TNDGATILK + V++PAAKVLV+++ +QD EVGDGTTSV ++AAELL+ A  L+  KIHP +II+G+    REA K   E L       G D       L+N A T++S KL+    D F  L VEAV  +K
Sbjct:   17 DEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW----REATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPB_HUMAN (T-complex protein 1 subunit beta OS=Homo sapiens GN=CCT2 PE=1 SV=4)

HSP 1 Score: 135.191 bits (339), Expect = 3.188e-31
Identity = 78/179 (43.58%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVT--ITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD------SLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            + +  +  R  + +   A+ ++VKS+LGP G+DK+L+    D +  +TNDGATILK + V++PAAKVLV+++ +QD EVGDGTTSV ++AAELL+ A  L+  KIHP +II+G+    REA K   E L       G D       L+N A T++S KL+    D F  L VEAV  +K
Sbjct:   17 DEERAETARLTSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW----REATKAAREALLSSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 65/171 (38.01%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            +R++G+ V++ N+ A + +A+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HPAAK +VE++  QD EVGDGTTSV+I+A E+L  A   +  ++HPT +IS YR A+ +    + +K+++ V+    D ++N   +S++ K I   S    N+ ++AV+ V+
Sbjct:   15 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL-KKISIPVDINDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQ 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_HUMAN (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 64/171 (37.43%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            +R++G+ V++ N+ A + +A+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HPAAK ++E++  QD EVGDGTTSV+I+A E+L  A   +  ++HPT +IS YR A+ +    + +K+++ V+    D ++N   +S++ K I   S    N+ ++AV+ V+
Sbjct:   15 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTL-KKISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQ 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPD_KLULA (T-complex protein 1 subunit delta OS=Kluyveromyces lactis GN=CCT4 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.164e-31
Identity = 71/169 (42.01%), Postives = 107/169 (63.31%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R+  Q+VR  N++A +AVA+ +++SLGP G+DKM+    GD+ I+NDG TILK + + HP AK+LVE++  QD E GDGTTSVVI+   LL  A  L+   IHPT I   ++ A   + + +   ++ K+    K++LV  A TS+S K++   S F A L V+ V ++
Sbjct:   16 REKPQEVRKANIIAARAVADAIRTSLGPKGMDKMIKTSRGDIIISNDGHTILKQMAILHPVAKMLVEVSGAQDVEAGDGTTSVVIMTGALLGAAEKLLNKGIHPTIIAESFQRAAERSVE-ILLNMSTKISLDDKEALVRAASTSLSSKIVSQHSSFLAPLAVDCVLSI 183          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPB_DICDI (T-complex protein 1 subunit beta OS=Dictyostelium discoideum GN=cct2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.439e-31
Identity = 72/170 (42.35%), Postives = 116/170 (68.24%), Query Frame = 1
Query:  169 QAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVD--DIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAM---REACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAV 663
            + G+  R  + +   A+ ++VK++LGP G+DK+L+   +  ++ ITNDGATIL  + +++PAAK+LV+++  QD EVGDGTTSV ++A ELL+    LV+ K+HP +IISG+RLA+   R A +   +  +    K  +D L+N A+T++S K++  + D FAN+VV+AV
Sbjct:   18 ERGEIARLSSFVGAIAITDLVKTTLGPKGMDKILISASNPNELIITNDGATILTKIYIDNPAAKILVDISRTQDDEVGDGTTSVCVLAGELLREGERLVQQKVHPQTIISGWRLALETARAALQSSTQDHSSDKVKFRED-LLNIARTTLSSKILHTEKDHFANMVVDAV 186          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 62/171 (36.26%), Postives = 117/171 (68.42%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKDSLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            +R++G+ V++ N+ A + +A+I+++ LGP  + KML+D +G + +TNDG  IL+ ++V+HPAAK ++E++  QD EVGDGTTSV+I+A E+L  A   +  ++HPT +IS YR+A+ +    + +K++  V+   ++ +++   +S++ K+I   S    N+ ++AV+ V+
Sbjct:   15 KRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTL-KKISTPVDVNNREMMLSIINSSITTKVISRWSSLACNIALDAVKTVQ 184          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPB_BOVIN (T-complex protein 1 subunit beta OS=Bos taurus GN=CCT2 PE=2 SV=3)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 77/179 (43.02%), Postives = 111/179 (62.01%), Query Frame = 1
Query:  163 ERQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVT--ITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD------SLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAVK 675
            + +  +  R  + +   A+ ++VKS+LGP G+DK+L+    D +  +TNDGATILK + V++PAAKVLV+++ +QD EVGDGTTSV ++AAELL+ A  L+  KIHP +II+G+    REA K   + L       G D       L+N A T++S KL+    D F  L VEAV  +K
Sbjct:   17 DEERAETARLSSFIGAIAIGDLVKSTLGPKGMDKILLSSGRDASLMVTNDGATILKNIGVDNPAAKVLVDMSRVQDDEVGDGTTSVTVLAAELLREAESLIAKKIHPQTIIAGW----REATKAARQALLNSAVDHGSDEVKFRQDLMNIAGTTLSSKLLTHHKDHFTKLAVEAVLRLK 191          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.277e-31
Identity = 74/171 (43.27%), Postives = 108/171 (63.16%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD--SLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G D    N+ A +A+A I+++SLGP G+DKML    GDVTITNDGATIL++++V++  AK+LVEL+  QD ++GDGTT VV++A  LL++A  L+   IHP  +  GY +A R A  ++ E ++ K E    D   LV    T++S K++       A + V+AV AV
Sbjct:   23 RLQGLDAHKANIAAAKAIARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHL-ESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEISVKAVLAV 192          
BLAST of FC921560 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.067e-30
Identity = 73/171 (42.69%), Postives = 109/171 (63.74%), Query Frame = 1
Query:  166 RQAGQDVRTQNVMACQAVANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKMLEVEHPAAKVLVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISGYRLAMREACKYVNEKLAVKVEKLGKD--SLVNCAKTSMSXKLIGGDSDFFANLVVEAVQAV 672
            R  G D +  N+ A ++VA I+++SLGP G+DKML    GDVTITNDGATIL++++V++  AK++VEL+  QD ++GDGTT VV++A  LL++A  L+   IHP  +  GY +A R A  ++ E ++ K E    D   LV    T++S K++       A + V+AV AV
Sbjct:   23 RLQGLDAQKANIAAGKSVARILRTSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHL-ESISTKYEFSATDIEPLVQTCMTTLSSKIVSRCKRALAEIAVKAVLAV 192          
The following BLAST results are available for this feature:
BLAST of FC921560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
TCPB_MACFA3.188e-3143.58T-complex protein 1 subunit beta OS=Macaca fascicu... [more]
TCPB_HUMAN3.188e-3143.58T-complex protein 1 subunit beta OS=Homo sapiens G... [more]
TCPG_PONAB4.164e-3138.01T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPG_HUMAN4.164e-3137.43T-complex protein 1 subunit gamma OS=Homo sapiens ... [more]
TCPD_KLULA4.164e-3142.01T-complex protein 1 subunit delta OS=Kluyveromyces... [more]
TCPB_DICDI5.439e-3142.35T-complex protein 1 subunit beta OS=Dictyostelium ... [more]
TCPG_MOUSE7.103e-3136.26T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPB_BOVIN7.103e-3143.02T-complex protein 1 subunit beta OS=Bos taurus GN=... [more]
TCPE1_AVESA9.277e-3143.27T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE2_AVESA2.067e-3042.69T-complex protein 1 subunit epsilon OS=Avena sativ... [more]

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Properties
Property NameValue
Genbank descriptionC32106F04EF RVDevelopN Citrus clementina cDNA clone C32106F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921560 ID=FC921560; Name=FC921560; organism=Citrus clementina; type=EST; length=689bp
GACATTCGACTGGAGAGGCCGCCTGCAATTTCTCGACTTCCCACTAAACT
CAAAAGCCTCAACTCACTCAACTCACTATTATCACATACCAGATCTAGGG
TTTTGCTCTTATCGTAAGTTATAGAAATGGCTATTTCATCGCAAACGCTT
GATATTCTAGGTGAACGCCAAGCCGGCCAAGATGTTCGCACTCAAAACGT
GATGGCGTGTCAAGCAGTTGCTAACATTGTTAAATCCTCACTCGGTCCTG
TTGGACTCGACAAGATGCTTGTTGATGATATTGGTGATGTAACAATAACT
AATGACGGTGCTACAATTCTGAAGATGTTAGAAGTTGAGCATCCGGCTGC
CAAGGTACTTGTGGAGTTGGCTGAGCTTCAAGATAGGGAAGTTGGAGATG
GAACTACTTCAGTGGTTATTGTCGCTGCGGAGTTGCTGAAGAGGGCTAAT
GATCTGGTTCGGAATAAGATTCACCCAACATCTATTATCAGTGGATACAG
ACTTGCAATGAGGGAAGCATGCAAGTATGTTAACGAAAAGTTGGCAGTGA
AGGTGGAAAAGCTTGGAAAAGATTCTTTGGTAAATTGTGCCAAGACAAGC
ATGTCCTNCAAGTTGATTGGTGGTGACAGCGACTTCTTTGCTAATTTGGT
TGTAGAAGCAGTTCAAGCAGTAAAGATGACTAATCACGA
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