FC921574

Overview
NameFC921574
Unique NameFC921574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_METST (50S ribosomal protein L37Ae OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.028e-12
Identity = 30/83 (36.14%), Postives = 44/83 (53.01%), Query Frame = 2
Query:   92 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRL 340
            +  K G  G++G RYG   ++ +K +E   H+K+ C  C +  VKR   GIW C+ CG V  GGAY   T      +  I+R+
Sbjct:    3 KKSKVGSTGRFGARYGRKAKRTVKDIEDKMHAKHVCPKCDRPGVKRTHAGIWKCRKCGAVFTGGAYIPTTPMGKVAKRNIKRI 85          
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_THEVO (50S ribosomal protein L37Ae OS=Thermoplasma volcanium GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 2
Query:   83 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 289
            M+KRT K G  G++G RYG ++RK+  ++   + + Y C  C K  VKR A GIW C+ CG   AGGAY
Sbjct:    1 MSKRTLKVGAAGRFGPRYGVTIRKEWNEIYKQKIALYTCPSCKKKRVKRLAAGIWVCRHCGYKFAGGAY 69          
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_AERPE (50S ribosomal protein L37Ae OS=Aeropyrum pernix GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.120e-11
Identity = 30/68 (44.12%), Postives = 43/68 (63.24%), Query Frame = 2
Query:   92 RTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKY-AVKRKAVGIWGCKDCGKVKAGGAYT 292
            RTK  G  G+YG RYG S+RK+++ +   ++  + C FCG    V+R +VG+W C+ CG   AG AYT
Sbjct:    3 RTKVVGPAGRYGPRYGVSVRKRVRDILARRYQPHECPFCGSTGTVRRVSVGVWSCRKCGNTWAGAAYT 70          
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_NANEQ (50S ribosomal protein L37Ae OS=Nanoarchaeum equitans GN=rpl37ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.463e-11
Identity = 31/65 (47.69%), Postives = 41/65 (63.08%), Query Frame = 2
Query:   95 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAY 289
            TKK G  G++G RYG  +RK++  +E+ Q  K+ C FC   AV R+A GI+ CK CGK   G AY
Sbjct:    6 TKKVGPTGRFGPRYGLGIRKRVLTVEIKQRKKHVCPFCRSKAVIREAYGIYRCKKCGKQFTGLAY 70          
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_HALSA (50S ribosomal protein L37Ae OS=Halobacterium salinarium GN=rpl37ae PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  107 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 352
            G  G++G RYG   R+++  +E + +  + C  CG  AV R+  GIW C  CG   AGGAY   T S  TV  +IR    +T
Sbjct:    8 GSAGRFGARYGRVSRRRVSDIEGTMNEDHACPDCGSEAVSREGTGIWQCGKCGYKYAGGAYQPQTPSGKTVTRSIRTALGET 89          
BLAST of FC921574 vs. ExPASy Swiss-Prot
Match: RL37A_HALS3 (50S ribosomal protein L37Ae OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl37Ae PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.482e-11
Identity = 32/82 (39.02%), Postives = 44/82 (53.66%), Query Frame = 2
Query:  107 GIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 352
            G  G++G RYG   R+++  +E + +  + C  CG  AV R+  GIW C  CG   AGGAY   T S  TV  +IR    +T
Sbjct:    8 GSAGRFGARYGRVSRRRVSDIEGTMNEDHACPDCGSEAVSREGTGIWQCGKCGYKYAGGAYQPQTPSGKTVTRSIRTALGET 89          
The following BLAST results are available for this feature:
BLAST of FC921574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RL37A_METST5.028e-1236.1450S ribosomal protein L37Ae OS=Methanosphaera stad... [more]
RL37A_THEVO1.120e-1146.3850S ribosomal protein L37Ae OS=Thermoplasma volcan... [more]
RL37A_AERPE1.120e-1144.1250S ribosomal protein L37Ae OS=Aeropyrum pernix GN... [more]
RL37A_NANEQ1.463e-1147.6950S ribosomal protein L37Ae OS=Nanoarchaeum equita... [more]
RL37A_HALSA9.482e-1139.0250S ribosomal protein L37Ae OS=Halobacterium salin... [more]
RL37A_HALS39.482e-1139.0250S ribosomal protein L37Ae OS=Halobacterium salin... [more]

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Properties
Property NameValue
Genbank descriptionC32106H07EF RVDevelopN Citrus clementina cDNA clone C32106H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921574 ID=FC921574; Name=FC921574; organism=Citrus clementina; type=EST; length=566bp
GGGTTTGGGTTTCTTTTGTCGCTCTACGTCTCAAACAGCCGCTGCTTGTT
GAAGAGCTACAGACCTTCGCTCCAACGCCACAATGACCAAGCGTACGAAG
AAGGCTGGAATCGTTGGAAAGTATGGTACCCGTTATGGTGCCAGTTTGAG
GAAGCAAATTAAGAAGATGGAGGTTAGTCAGCATAGCAAATATTTCTGCG
AATTTTGCGGGAAGTATGCGGTGAAGAGGAAAGCTGTTGGCATTTGGGGC
TGCAAGGACTGTGGGAAAGTCAAGGCAGGCGGTGCCTACACTTTGAACAC
TGCTAGTGCTGTGACTGTGAGGAGCACAATCCGTAGGTTGAGGGAGCAAA
CTGAAAGCTGAGCTTGCCACCATTGGCTTACTCCCGTGTCTTAGGTCGTT
TGATCTTTAGTTTCGGATACAACCTTAAATCATTTTTGATGTTGCTTTAT
TTCTAGATGCAAAACAATTGGTTGTTGGAACATGAAACTTTTGGCTGTGT
TTTGACTCTTGAGATGTTCATTCGCTATTTTTCCTATGAAATTATGTTAT
CTAGTGGGTTTTCCTA
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