FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.023e-53
Identity = 104/157 (66.24%), Postives = 129/157 (82.17%), Query Frame = 3
Query:  177 MAFPNELAAGREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            +A P    +G        K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+L+VFSSRGRLYEYSNNSVK TI+RYKKA +DTSN  ++ E NAQ YQQEAAKL+ QI+N+QNSNR ++G++++ +N +ELK +E RL+KG+ +
Sbjct:   23 VASPGSGGSGGSGSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGK 179          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD13_ORYSJ (MADS-box transcription factor 13 OS=Oryza sativa subsp. japonica GN=MADS13 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.315e-49
Identity = 102/140 (72.86%), Postives = 125/140 (89.29%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS-NNSVKSTIDRYKKATADTSNTGS-ICEANA-QFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG+IEIKRIENTT+RQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYS NN+VK+TIDRYKKA A  S +G+ + E NA Q+YQQE+AKLR QI  +QN+N++++G+++S L+ KELK +E+RLEKGIS+
Sbjct:    1 MGRGRIEIKRIENTTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNNVKATIDRYKKAHACGSTSGAPLIEVNAQQYYQQESAKLRHQIQMLQNTNKHLVGDNVSNLSLKELKQLESRLEKGISK 140          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 96/139 (69.06%), Postives = 121/139 (87.05%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN-NSVKSTIDRYKKATADTSNTGSICEANA-QFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIEIKRIEN T+RQVTFCKRRNGLLKKAYEL++LCDAE++LIVFSSRGRLYE+SN NS +STI+RYKKA+A TS +  + + N+ Q++QQEAAK+R QI  +QN+NR+++GES+  +  KELK++E RLEKGISR
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYFQQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISR 139          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD27_ORYSJ (MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.721e-36
Identity = 76/132 (57.58%), Postives = 103/132 (78.03%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRGKI I+RI+N+T+RQVTF KRRNG+ KKA EL++LCDAEV L++FSS GRLYEYS+ S+KS IDRY K + D     +   +  +F+Q+EAA LR Q+ N+Q ++R ++GE LSGLN KEL+++E +LE
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGIFKKAKELAILCDAEVGLMIFSSTGRLYEYSSTSMKSVIDRYGK-SKDEQQAVANPNSELKFWQREAASLRQQLHNLQENHRQLMGEDLSGLNVKELQSLENQLE 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.457e-35
Identity = 74/135 (54.81%), Postives = 104/135 (77.04%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGKIEIKRI+N T+RQVTF KRR+GL KKA ELS+LCDAEV L+VFSS  RLY+++++S+KS I+RY +   D   T +   + A+ +QQEAA LR Q+ N+Q  +R +LG+ LSGL+ ++L+N+E++LE  +
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSMKSIIERYNETKEDPHQTMN-ASSEAKLWQQEAASLRQQLHNLQEYHRQLLGQQLSGLDVEDLQNLESKLEMSL 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.245e-35
Identity = 74/132 (56.06%), Postives = 100/132 (75.76%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRGKI I+RI+N+T+RQVTF KRRNGLLKKA ELS+LCDAEV L+VFSS GRLYE+S+ ++K+ IDRY  A  +    G    +  + +Q+EAA LR Q+ N+Q S++ ++GE LSGL  ++L+ +E RLE
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTNMKTVIDRYTNAKEEL--LGGNATSEIKIWQREAASLRQQLHNLQESHKQLMGEELSGLGVRDLQGLENRLE 130          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.120e-34
Identity = 70/135 (51.85%), Postives = 100/135 (74.07%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVSLI+FS +G+LYE+++++++ TIDRY + T D  +T  + E N Q  + EAA +  +I  ++ S R +LGE +   + +EL+ +E +LEK +
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSV 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 7.993e-34
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGS-ICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRS 647
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FSSRG+LYE+ +  +  T+++Y     +   + S +     Q + QE ++L+ ++  +Q S R+MLGE L  L+ KEL+ +E +LE  +S++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQA 139          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.363e-33
Identity = 76/139 (54.68%), Postives = 101/139 (72.66%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K       T  S  EA     QQE  KL+ +   +Q S RN+LGE L  LN KEL+++E +L+  + +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNISTREALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQ 139          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.781e-33
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FSSRG+LYE+ +  ++STI+RY +   + S + +  E   Q + QE  KL+ +  ++  +NRN+LGE L  +  KEL+ +E +LE  ++
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGIESTIERYNRC-YNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALT 135          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD58_ORYSJ2.023e-5366.24MADS-box transcription factor 58 OS=Oryza sativa s... [more]
MAD13_ORYSJ2.315e-4972.86MADS-box transcription factor 13 OS=Oryza sativa s... [more]
MAD21_ORYSJ3.023e-4969.06MADS-box transcription factor 21 OS=Oryza sativa s... [more]
MAD27_ORYSJ1.721e-3657.58MADS-box transcription factor 27 OS=Oryza sativa s... [more]
MAD23_ORYSJ1.457e-3554.81MADS-box transcription factor 23 OS=Oryza sativa s... [more]
MAD57_ORYSJ3.245e-3556.06MADS-box transcription factor 57 OS=Oryza sativa s... [more]
SOC1_ARATH6.120e-3451.85MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD17_ORYSJ7.993e-3450.36MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL9_PETHY1.363e-3354.68Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
AGL6_ARATH1.781e-3352.94Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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