FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2A_BOVIN (Myocyte-specific enhancer factor 2A OS=Bos taurus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I+RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+   +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I+RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+   +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I+RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+   +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 36/69 (52.17%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I+RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+   +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 37/69 (53.62%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD +++LI+F+S  RL++Y+++ +   + +Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQYASSDMDRVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL62_ARATH (Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.956e-13
Identity = 35/72 (48.61%), Postives = 52/72 (72.22%), Query Frame = 3
Query:  225 KRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            K+  GR KIE+ +++N +N QVTF KRR+GL KKA EL  LC AEV+++VFS   +++ + + +V S IDR+
Sbjct:    3 KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRF 74          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.016e-12
Identity = 40/113 (35.40%), Postives = 71/113 (62.83%), Query Frame = 3
Query:  312 GLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            GLLKKA EL++LCDA++ +I+FSS G+++E+S+   S++  IDRY+K + + +        N Q Y  E  +++ +I  +Q + R+  GE L+ L   E+  +E +LE  +++
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPVYD----NQQVY-CEITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNK 109          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL61_ARATH (Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.860e-12
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 3
Query:  225 KRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            K  +GR KI + +I+  ++RQVTF KRR GL KKA EL  LC AE+ +IVFS   + + + + SV+S +DRY
Sbjct:   59 KESIGRQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRY 130          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: RLM1_YEAST (Transcription factor RLM1 OS=Saccharomyces cerevisiae GN=RLM1 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.042e-12
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYK 443
            MGR KIEI+RI +  NR VTF KR+ GL KKA+ELSVLC  ++++I+  S    YE+S+      I  Y+
Sbjct:    1 MGRRKIEIQRISDDRNRAVTFIKRKAGLFKKAHELSVLCQVDIAVIILGSNNTFYEFSSVDTNDLIYHYQ 70          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MEF2A_BOVIN4.872e-1553.62Myocyte-specific enhancer factor 2A OS=Bos taurus ... [more]
MEF2D_XENLA8.310e-1552.17Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT8.310e-1552.17Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE8.310e-1552.17Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN8.310e-1552.17Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MEF2B_MOUSE8.310e-1553.62Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]
AGL62_ARATH5.956e-1348.61Agamous-like MADS-box protein AGL62 OS=Arabidopsis... [more]
AP32_ASAEU1.016e-1235.40MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AGL61_ARATH3.860e-1248.61Agamous-like MADS-box protein AGL61 OS=Arabidopsis... [more]
RLM1_YEAST5.042e-1248.57Transcription factor RLM1 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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