FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 6.767e-33
Identity = 72/136 (52.94%), Postives = 100/136 (73.53%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ S + +  T++RY++ +  +  T    +     Y QE  KL+ ++  +Q S+RN+LGE L  L+ KEL+ +E +L+K +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKETESSY-QEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSL 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 8.838e-33
Identity = 68/138 (49.28%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRS 647
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FSSRG+LYE+ +  +  T++RY+    +  ++ +       +Y  E +KL+ +   +Q + R++LGE L  L+ KEL+ +E +LE  +S++
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSETQSWY-HEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQA 137          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEAN--AQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S  S+  T++RY+K +    +T    + N   Q  + E  KL+ ++ N+Q + RN+LGE L  L  KEL+ +E +L+  +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSL 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 2.571e-32
Identity = 70/138 (50.72%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++++  T+DRY+K +  +    +      +   +E  KL+ +  N+Q   RN+LGE L  LN KEL+ +E +L+  + +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSNMLKTLDRYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQ 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 71/138 (51.45%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEVSLIVFS+RG+LYE+ S +++  T++RY+K +  +    +      +   +E  KL+ +  N+Q   RN+LGE L  LN KEL+ +E +L+  + +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVSLIVFSNRGKLYEFCSTSNMLKTLERYQKCSYGSIEVNNKPAKELENSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQ 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.358e-32
Identity = 69/136 (50.74%), Postives = 99/136 (72.79%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRGK+E+KRIEN   RQVTF KR++GLLKKAYELSVLCDAEVSLI+FS+ G+LYE+SN  V  TI+RY +   +  +  ++   + Q  +QE  KL+ +  ++  ++RN++GE L G++ KEL+ +E +LE  +S
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEFSNVGVGRTIERYYRCKDNLLDNDTL--EDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALS 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 70/138 (50.72%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQF--YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S  S+  T+++Y+K +     T      + Q    + E  KL+ ++ N+Q + RN+LGE L  L  KEL+++E +L+  +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSL 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 70/138 (50.72%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQF--YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S  S+  T+++Y+K +     T      + Q    + E  KL+ ++ N+Q + RN+LGE L  L  KEL+++E +L+  +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSL 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 72/144 (50.00%), Postives = 102/144 (70.83%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATAD------TSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KR+EN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LIVFS+RG+LYE+ S +S+  T++RY+K          TS    + E ++   QQE  KL+ +  ++Q S RN++GE L  L+ K+L+ +E +L+  + +
Sbjct:    1 MGRGRVELKRVENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCNYGAPEGNVTSKEALVLELSS---QQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQ 141          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.482e-32
Identity = 74/139 (53.24%), Postives = 99/139 (71.22%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTG-SICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIE   NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K          S  EA     QQE  KL+ +   +Q S RN+LGE L  LN KEL+++E +L+  + +
Sbjct:    1 MGRGRVELKRIEGKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNISTREALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQ 139          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
CMB1_DIACA6.767e-3352.94MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS6_ORYSJ8.838e-3349.28MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS8_ORYSJ1.507e-3252.17MADS-box transcription factor 8 OS=Oryza sativa su... [more]
SEP1_ARATH2.571e-3250.72Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
SEP2_ARATH3.358e-3251.45Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
AGL13_ARATH3.358e-3250.74Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
MADS7_ORYSJ4.386e-3250.72MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI4.386e-3250.72MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MTF1_PEA7.482e-3250.00MADS-box transcription factor 1 OS=Pisum sativum G... [more]
AGL9_SOLLC7.482e-3253.24Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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