FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.667e-31
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQF-----YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RGRL+E+S +S +  T++RY+    + ++    CEA+A         QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNS----CEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIE 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.667e-31
Identity = 72/138 (52.17%), Postives = 100/138 (72.46%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQF-----YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RGRL+E+S +S +  T++RY+    + ++    CEA+A         QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNS----CEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIE 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.177e-31
Identity = 66/132 (50.00%), Postives = 101/132 (76.52%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRGKI I+RI+++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FSS G+LY+++++S+KS IDRY K+  +     +   +  +F+Q+EAA LR ++  +Q ++R M+GE L+GL+  EL ++E ++E
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSSMKSVIDRYNKSKIEQQQLLNPA-SEVKFWQREAAVLRQELHALQENHRQMMGEQLNGLSVNELNSLENQIE 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.713e-31
Identity = 73/138 (52.90%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M RG+ E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LIVFS RGRLYE+ S  S++ TIDRYK  T D  N  +I + + Q  + +   L  ++  +  S R +LGE+L G + +EL+ +E +LEK + +
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLEMKLEKSLHK 137          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELS+LCDAEV+LI+FS RGRL+E+S++S +  T++RY+    ++ +  +      +   QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  + +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAA---PENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQ 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 67/138 (48.55%), Postives = 99/138 (71.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGK+E+KRIEN  +RQVTF KRRNGLLKKAYELS+LCDAEV+LI+FS RGRL+E+S++S +  T++RY+    ++ +  +      +   QE  KL+ ++  +Q + RN+LGE L  L+ KEL+ +E ++E  + +
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAA---PENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQ 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 73/136 (53.68%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            M RG+ E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LIVFS RGRLYE+ S  S++ TIDRYK  T D  N  +I + + Q  + +   L  ++  +  S R +LGE+L G + +EL+ +E +LEK +
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTI-QQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLEMKLEKSL 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 6.334e-31
Identity = 66/135 (48.89%), Postives = 99/135 (73.33%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGKI IKRI+NT NRQVTF KRR GL+KKA EL++LCDA+V LIVFS  GRLY++S++S+KS I+RY++A  +     +   + A+F+Q+E   LR Q+ N+ ++NR +LGE +S    ++L+ ++ ++E  +
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSSMKSIIERYQEAGEEHCRLLNPM-SEAKFWQREVTTLRQQVQNLHHNNRQLLGEEISNFTVRDLQLLQNQVEMSL 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 8.272e-31
Identity = 73/141 (51.77%), Postives = 101/141 (71.63%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKAT--ADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K    A   N  S      +   QQE  KL+ +   +Q + RN+LGE L  L+ KEL+++E +L+  + +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLRTLERYQKCNYGAPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQ 141          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.080e-30
Identity = 66/137 (48.18%), Postives = 99/137 (72.26%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M RGK E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+L++FS R +LYE+S++S+ +TI+RY++   +  N     + N+Q  + E + L  +I  ++ S R +LGE +   + +EL+ +E +L++ +SR
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSR 136          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MADS5_ORYSJ1.667e-3152.17MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI1.667e-3152.17MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL21_ARATH2.177e-3150.00Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD56_ORYSJ3.713e-3152.90MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MADS1_ORYSJ6.334e-3148.55MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI6.334e-3148.55MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MAD56_ORYSI6.334e-3153.68MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD25_ORYSJ6.334e-3148.89MADS-box transcription factor 25 OS=Oryza sativa s... [more]
SEP3_ARATH8.272e-3151.77Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL19_ARATH1.080e-3048.18Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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