FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.411e-30
Identity = 70/136 (51.47%), Postives = 95/136 (69.85%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+K IEN  NRQVTF KRR  LLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S+ S+  T+++Y+K     S   +I     Q  QQE  KL+ ++  +Q S RN+LGE L  L  KEL+ +E +L+  +
Sbjct:    1 MGRGRVELKMIENKINRQVTFAKRRKRLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSTSMLKTLEKYQKCNFG-SPESTIISRETQSSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSL 135          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.407e-30
Identity = 68/140 (48.57%), Postives = 102/140 (72.86%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKK---ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGK+E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAE++L++FS+RG+LYE+  S + +  T+D+Y+K   AT D + +      + Q   Q+  KL+ ++  +Q+S R++LGE LS ++  EL+++E +++  +
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAK----DLQDKYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: GGM13_GNEGN (MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.362e-30
Identity = 72/139 (51.80%), Postives = 95/139 (68.35%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYS--NNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIEIKRIENTTNRQVTF KRR GLLKKA+ELSVLCDAE+ LI+FSS G+L+EYS  ++S+K  I+RY+K +        I E + Q    E  +++ +   +Q + R M+GE L+ L   EL ++  +LE   SR
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSASSSMKKIIERYQKVSG-----ARITEYDNQHLYCEMTRMKNENEKLQTNIRRMMGEDLTSLTMTELHHLGQQLESASSR 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.003e-30
Identity = 71/141 (50.35%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKAT---ADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRG++E+KRIEN  NRQVTF KRRNGLLKKAYELSVLCDAEV+LI+FS+RG+LYE+ S++S+  T++RY+K      + +       A     QQE  KL+ +   +Q + RN+LGE L  L+ KEL+ +E +L+  + +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMIRTLERYQKCNYGPPEPNVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQ 141          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL17_ARATH (Agamous-like MADS-box protein AGL17 OS=Arabidopsis thaliana GN=AGL17 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.475e-29
Identity = 63/135 (46.67%), Postives = 101/135 (74.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGKI I++I+++T+RQVTF KRR GL+KKA EL++LCDAEV LI+FS+  +LY+++++SVKSTI+R+  A  +     +   +  +F+Q+EA  LR ++ ++Q + R + G  L+GL+ KEL+N+E++LE  +
Sbjct:    1 MGRGKIVIQKIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVCLIIFSNTDKLYDFASSSVKSTIERFNTAKMEEQELMNPA-SEVKFWQREAETLRQELHSLQENYRQLTGVELNGLSVKELQNIESQLEMSL 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 3.475e-29
Identity = 67/138 (48.55%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M RGK E+KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LI+FS RG+LYE+ S++S+  T++RY+K   D  +     + N+Q  + E   L  +I +++ S R M+GE L   + +EL+ +E +L++ + +
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMK 137          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.011e-28
Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS----VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGK+++KRIEN  NRQVTF KRRNGLLKKA+E+SVLCDAEV+ IVFS +G+LYEY+ +S    +    +RY  A     +  S  E N   +  E  KL+ +I  +Q  +++++GE L  LN KEL+ +E +LE  +
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGN---WCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 62/136 (45.59%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N+S ++  ++RY++ +            +   +  E AKL+ ++  +Q + ++ +GE L  LN KEL+N+E +L+  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSAL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.725e-28
Identity = 63/136 (46.32%), Postives = 97/136 (71.32%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV+LIVFSS+G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L+  I
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYSDKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAI 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.942e-28
Identity = 64/144 (44.44%), Postives = 98/144 (68.06%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGK+++KRIENT NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LY+Y+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSL 136          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AGL9_ARADE1.411e-3051.47Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL3_ARATH2.407e-3048.57Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
GGM13_GNEGN5.362e-3051.80MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 P... [more]
AGL9_SINAL7.003e-3050.35Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL17_ARATH3.475e-2946.67Agamous-like MADS-box protein AGL17 OS=Arabidopsis... [more]
AGL14_ARATH3.475e-2948.55Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD15_ORYSJ1.011e-2848.20MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AGL8_SOLTU1.725e-2845.59Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH1.725e-2846.32Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
MAD14_ORYSI2.942e-2844.44MADS-box transcription factor 14 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
back to top