FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 3.842e-28
Identity = 66/138 (47.83%), Postives = 98/138 (71.01%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQF-YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++E+KRIEN  NRQVTF KRR GLLKKA E+SVLCDAEVSLIVFS +G+L+EYS+ S ++  ++RY++ + A+          NAQ  +  E ++L+ +I  ++ + R+ LGE L  ++ K+L+N+E +LE  +
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQTNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETAL 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 64/144 (44.44%), Postives = 97/144 (67.36%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK--------ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGK+++KRIEN  NRQVTF KRR+GLLKKA E+SVLCDAEV+LI+FS++G+LYEY+ +S +   ++RY++         +A++   G+ C         E  KL+ ++  +Q   ++++GE L  LN KEL+ +E +LE  +
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSYAEKVLISAESDTQGNWC--------HEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 64/136 (47.06%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRGKIEIKRIEN++NRQVT+ KRRNG+LKKA E+SVLCDA VS+I+F+S G+++E+S+ S+   +D+Y K T        + +A  +    E  K++    NMQ   R++ GE ++ LN +EL  +E  LE G++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLT 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 61/136 (44.85%), Postives = 96/136 (70.59%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV+L++FSS+G+L+EYS +S ++  ++RY +             + ++ +  E AKL+ ++  ++ + RN +GE L  L+ KEL+++E +L   I
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYSDKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAI 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL15_BRANA (Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.018e-28
Identity = 67/131 (51.15%), Postives = 91/131 (69.47%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRL 626
            MGRGKIEIKRIEN  +RQVTF KRR GLLKKA+ELSVLCDAEV++IVFS  G+L+E+S+ S+K T+ RY      +   G  C+   Q    E   L+ +IS +Q  + +M G+ L+ L+ KEL+++E +L
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSMKKTLLRYGNYQISSDVPGINCKTENQEECTEVDLLKDEISMLQEKHLHMQGKPLNLLSLKELQHLEKQL 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.554e-28
Identity = 63/135 (46.67%), Postives = 95/135 (70.37%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEV+LIVFS RG+LYE+++ S + TI+RY+  T +     ++ + + +  + +A  L  ++  ++   R +LGE L   + +EL ++E +LE+ +
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKENIGNKTV-QQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSL 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.118e-27
Identity = 62/138 (44.93%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGK+ ++RIEN  +RQVTF KRRNGLLKKAYELS+LCDAEV+L++FS  GRLY++S++S +  T++RY++    + +  +      Q   QE   L+  +  +Q S RN+LGE L+ L   EL+ +E+++ + + +
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQ 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.118e-27
Identity = 63/136 (46.32%), Postives = 93/136 (68.38%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRGKIEIKRIEN++NRQVT+ KRRNG+LKKA E+SVLCDA VS+I+F+S G+++E+S+ S+   +D+Y K T        + +A  +    E  K++    NMQ   R++ GE ++ LN +EL  +E  L+ G++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVDILDQYHKLTG-----RRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLT 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 60/136 (44.12%), Postives = 96/136 (70.59%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+N+S ++  ++RY++ +            +   +  E  KL+ ++  +Q + ++ +GE L  L+ KEL+N+E +L+  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSAL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.491e-27
Identity = 67/131 (51.15%), Postives = 89/131 (67.94%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRL 626
            MGRGKIEIKRIEN  +RQVTF KRR+GLLKKA ELSVLCDAEV++IVFS  G+L+EYS+  +K T+ RY        N  S   + A+    E   L+ Q+S +Q  +  + G+ L+ L FKEL+++E +L
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGMKQTLSRY-------GNHQSSSASKAEEDCAEVDILKDQLSKLQEKHLQLQGKGLNPLTFKELQSLEQQL 124          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
CAL_ARATH3.842e-2847.83Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD14_ORYSJ5.018e-2844.44MADS-box transcription factor 14 OS=Oryza sativa s... [more]
FBP1_PETHY5.018e-2847.06Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
AGL8_SINAL5.018e-2844.85Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL15_BRANA5.018e-2851.15Agamous-like MADS-box protein AGL15 OS=Brassica na... [more]
MAD50_ORYSJ6.554e-2846.67MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD34_ORYSJ1.118e-2744.93MADS-box transcription factor 34 OS=Oryza sativa s... [more]
GLOB_TOBAC1.118e-2746.32Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
AGL8_SOLLC1.907e-2744.12Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL15_ARATH2.491e-2751.15Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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