FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 62/133 (46.62%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRG ++++RIEN  NRQVTF KRRNGLLKKA+E+SVLCDA+V+LIVFS++G+LYE+ S++S++  ++RY++ + D          + + +  E   L+ ++  +Q S R +LGE L  L  KEL+ +E +LE
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLE 133          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.253e-27
Identity = 62/133 (46.62%), Postives = 94/133 (70.68%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            MGRG ++++RIEN  NRQVTF KRRNGLLKKA+E+SVLCDA+V+LIVFS++G+LYE+ S++S++  ++RY++ + D          + + +  E   L+ ++  +Q S R +LGE L  L  KEL+ +E +LE
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLE 133          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.248e-27
Identity = 61/136 (44.85%), Postives = 94/136 (69.12%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR+GLLKKA+E+SVLCDAEV LIVFS++G+L+EY+ +S ++  ++RY++ +            +   +  E AKL+ ++  +Q + +  +GE L  LN KEL+N+E +L   +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASAL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.108e-26
Identity = 61/137 (44.53%), Postives = 97/137 (70.80%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEV+L+VFS +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTAL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.596e-26
Identity = 61/137 (44.53%), Postives = 97/137 (70.80%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS-VKSTIDRYKK-ATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRG++++KRIEN  NRQVTF KRR GLLKKA+E+SVLCDAEV+L+VFS +G+L+EYS +S ++  ++RY++ + A+        + N   +  E  +L+ +I  ++ + R+ LGE L  ++ KEL+N+E +L+  +
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTN-WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTAL 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.012e-26
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN--NSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIE+KRIEN T+RQVTF KRR GLLKK +ELSVLCDA++ LI+FSS+G+L+EY +  +S+   I RY      T+      E N      E AK+R    N+Q S +   G+ LS   ++EL  +E +LE  +++
Sbjct:    4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRY----LQTTGASLPVEDNRVQLYDEVAKMRRDTLNLQLSLQRYKGDDLSLAQYEELNELEKQLEHALNK 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS2_ORYSJ (MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.785e-25
Identity = 65/138 (47.10%), Postives = 93/138 (67.39%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN--NSVKSTIDRYKKATADTSNTGSIC-EANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGKIEIKRIEN+TNRQVTF KRR+G+LKKA E+SVLCDAEV +++FSS G+LY+Y +   S+   +++Y+      +N+G I  +   +    E  +++ +  NMQ   R++ GE L+ L  KEL  +E  L+ GI
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSPKTSLSRILEKYQ------TNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGI 132          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.045e-25
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M R KI+IK+I+N+T RQVTF KRR GL KKA ELSVLCDA+V+LI+FSS G+L++YS++S+K  ++R    + +                   ++L  +IS   +  R M GE L GLN +EL+ +E  LE G+SR
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSSMKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSR 137          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.193e-25
Identity = 61/138 (44.20%), Postives = 92/138 (66.67%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNS--VKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRGKIEIKRIEN++NRQVT+ KRRNG++KKA E++VLCDA+VSLI+F + G+++EY + S  +   +D Y+K +        + +A  +    E  +++ +  NMQ   R++ GE ++ LN KEL  +E  L  G+S
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSG-----RRLWDAKHENLSNEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLS 133          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.782e-25
Identity = 64/142 (45.07%), Postives = 93/142 (65.49%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATA---DTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            MGRGKIE+KRIEN T+RQVTF KRR+GL+KK +ELSVLCDA++ LIVFS++G+L EY     S+K  IDRY KA     +  N       N Q   +E  +++ +  N+Q + +   G+ LS + F+EL  +E  L++ +++
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVI-KELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNK 141          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
MAD18_ORYSJ3.253e-2746.62MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI3.253e-2746.62MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL8_SOLCO4.248e-2744.85Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AP1_SINAL2.108e-2644.53Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH3.596e-2644.53Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
FBP24_PETHY8.012e-2646.76MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MADS2_ORYSJ1.785e-2547.10MADS-box transcription factor 2 OS=Oryza sativa su... [more]
JOIN_SOLLC3.045e-2545.26MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
MADS2_PETHY5.193e-2544.20Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
DEF21_ANTMA6.782e-2545.07MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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