FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.847e-22
Identity = 58/129 (44.96%), Postives = 83/129 (64.34%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNM 614
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+ELSVLCDA+VS+I+ SS  +L+EY     + K   D+Y+KA         +  ++ +  Q+   KL     N++   R  +GESL+ L ++++ N+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNL 124          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.374e-22
Identity = 61/139 (43.88%), Postives = 84/139 (60.43%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEA--AKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M R + EIKRIE+   RQVTF KRR GL KKA ELSVLCDA+V+LIVFSS G+L  ++++S+   ID+Y      ++N G   + +     + +  A L  Q++      R M GE L GL+  EL+ +E  LE G+ R
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHR 136          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.197e-21
Identity = 60/145 (41.38%), Postives = 84/145 (57.93%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQ-------QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M RGKI++KRIEN  +RQVTFCKRR GLLKKA ELSVLCDAE+ +++FS +G+L+E  +  +++  ID+Y K T     + S      +  Q        E   L+ +I  +Q     M G     +N +EL  +E  LE  IS+
Sbjct:    1 MARGKIQLKRIENPVHRQVTFCKRRTGLLKKAKELSVLCDAEIGVVIFSPQGKLFELATKGTMEGMIDKYMKCTGGGRGSSSATFTAQEQLQPPNLDPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQ 145          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 55/134 (41.04%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLS-GLNFKELKNMETRLE 629
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+  +  +++  I+RYK A+ + +N    C       +QEA  L+ +I+ +Q   R + G   +  +  +EL  +E  LE
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANA---CGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLE 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 55/134 (41.04%), Postives = 87/134 (64.93%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLS-GLNFKELKNMETRLE 629
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+  +  +++  I+RYK A+ + +N    C       +QEA  L+ +I+ +Q   R + G   +  +  +EL  +E  LE
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANA---CGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLE 131          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD20_ORYSJ (MADS-box transcription factor 20 OS=Oryza sativa subsp. japonica GN=MADS20 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.667e-21
Identity = 51/141 (36.17%), Postives = 92/141 (65.25%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQF---YQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGRGK++++RIEN  +RQVTF KRR GLLKKA+E++VLCD +V+ IVFS++G L+ Y  S+ +++  +++Y +     S   ++ E   +       +  KLR +I  ++ S RN++G+ L  L  ++++ +E +++  ++
Sbjct:    1 MGRGKVQVRRIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYASSHTTMERILEKYDRHEL-LSEGNNVIEEFPELEGSMSYDHIKLRGRIEALKKSQRNLMGQELDSLTLQDIQQLENQIDTSLN 140          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.760e-21
Identity = 62/150 (41.33%), Postives = 88/150 (58.67%), Query Frame = 3
Query:  204 GREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQE----AAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            GR E   +   G R +I I+RI+N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L+++++ S++  IDRY       S T    E +    Q E     A+L+ +++      R M GE L  LN ++L+ +E  LE G+
Sbjct:    9 GRGEGEGRAATGKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYN----SHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGL 154          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.324e-20
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSV--KSTIDRYKKATADTSNTGSICEANAQFYQ--QEAAKLRIQISNMQNSNRNMLGESLSGLN-FKELKNMETRLEKGISR 644
            MG+GKIE+KRIE+ T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  V       RY+  T +T     + E N    Q   E  +LR +I  ++ S R   GE LS ++   EL  ++ +LE  +S+
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNT----RLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSK 138          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.258e-20
Identity = 57/159 (35.85%), Postives = 85/159 (53.46%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY----------------------QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISR 644
            M R + EI+RIE+   RQVTF KRR GL KKA EL+VLCDA+V+L+VFSS G+L +++++++   ID+Y   + +   T      +  F+                        + + L  Q++      R M GE L GL+ +EL+ ME  LE G+ R
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQR 159          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.030e-20
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAK----LRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLE 629
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E  +N ++ + ++RY+   A     G   E  A   QQ A +    LR +I  +Q   R+  G     +   +L  +E  LE
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVA-----GGQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLE 132          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DEFA_ANTMA1.847e-2244.96Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD22_ORYSJ5.374e-2243.88MADS-box transcription factor 22 OS=Oryza sativa s... [more]
AGL12_ARATH1.197e-2141.38Agamous-like MADS-box protein AGL12 OS=Arabidopsis... [more]
MAD26_ORYSJ2.667e-2141.04MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI2.667e-2141.04MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD20_ORYSJ2.667e-2136.17MADS-box transcription factor 20 OS=Oryza sativa s... [more]
MAD47_ORYSJ7.760e-2141.33MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MAD30_ORYSJ1.324e-2042.25MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD55_ORYSJ2.258e-2035.85MADS-box transcription factor 55 OS=Oryza sativa s... [more]
MAD33_ORYSJ5.030e-2043.07MADS-box transcription factor 33 OS=Oryza sativa s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
back to top