FC921590

Overview
NameFC921590
Unique NameFC921590
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.496e-19
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN-NSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGIS 641
            MGR K+EIKRIEN ++RQVTF KRRNGL++KA +LSVLCDA V+L+V S+ G+LY +S+ +++   +DRY K  AD        +  A  +Q +A         ++  +  ++G ++  ++   L  +E  LE  +S
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQHAD--------DLKALDHQSKALNYGSHYELLELVDSKLVGSNVKNVSIDALVQLEEHLETALS 129          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 55/137 (40.15%), Postives = 81/137 (59.12%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNN--SVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGK+EI++IEN TNRQVTF KRRNG++KKA EL+VLCDA+VSL++ SS  +L+ Y +   S+K   D Y+K          +     +  Q++  K+    S ++      +G  L GL   EL  ++  +E+ I
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKIEG-----VDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAI 132          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: TT16_ARATH (Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.113e-18
Identity = 57/137 (41.61%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGI 638
            MGRGKIEIK+IEN T RQVTF KRR GL+KK  ELS+LCDA + LIVFS+ G+L E+    N +   IDRY                + +    E   LR +  N++   R   G  L+ +   EL  +E +LE  +
Sbjct:    1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSEQNRMPQLIDRYLHTNGLRLPDH---HDDQEQLHHEMELLRRETCNLELRLRPFHGHDLASIPPNELDGLERQLEHSV 134          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: SRFC_DICDI (Serum factor response C OS=Dictyostelium discoideum GN=srfC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.798e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNT 470
            MGR KI I++I N  NRQ TF KR+NGL+KKA ELS+LCD E+++IVFSS  +L++YS+  +   + RY   T +T NT
Sbjct:    3 MGRNKITIEKISNERNRQATFTKRKNGLIKKAMELSILCDCEIAMIVFSSNNKLFQYSSRDMDKLLIRY---TDNTDNT 78          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.583e-16
Identity = 46/117 (39.32%), Postives = 75/117 (64.10%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYE-YSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQ----QEAAKLRIQISNMQNSNRNML 569
            MGR K+EIKRIEN ++RQVTF KRRNGL++KA +LS+LC++ ++++V S  G+LY+  S +++   IDRY+   AD      + E    +       E  + +++ SN+ N++ + L
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRNYLPLKELLEIVQSKLEESNVDNASVDTL 117          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.406e-16
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSN---NSVKSTIDRYKKAT-------------ADTSNTGSICE 485
            MGRG+ EIKRIEN T RQ TF KRR+GL KKA EL+VLCDA++ L++FS+ G+LY + +    SV+  ++RY+  T             A+    GS+C+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQERRAELEKVGSMCD 100          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2_DROME (Myocyte-specific enhancer factor 2 OS=Drosophila melanogaster GN=Mef2 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.187e-15
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ G++KKAYELSVLCD E++LI+FSS  +LY+Y++  +   + +Y
Sbjct:    1 MGRKKIQISRITDERNRQVTFNKRKFGVMKKAYELSVLCDCEIALIIFSSSNKLYQYASTDMDRVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.856e-15
Identity = 38/69 (55.07%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  RL++Y++  +   + +Y
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2C_PONAB (Myocyte-specific enhancer factor 2C OS=Pongo abelii GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
BLAST of FC921590 vs. ExPASy Swiss-Prot
Match: MEF2C_PIG (Myocyte-specific enhancer factor 2C OS=Sus scrofa GN=MEF2C PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.872e-15
Identity = 37/69 (53.62%), Postives = 53/69 (76.81%), Query Frame = 3
Query:  234 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRY 440
            MGR KI+I RI +  NRQVTF KR+ GL+KKAYELSVLCD E++LI+F+S  +L++Y++  +   + +Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQYASTDMDKVLLKY 69          
The following BLAST results are available for this feature:
BLAST of FC921590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
FLC_ARATH2.496e-1939.42MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
CMB2_DIACA5.561e-1940.15MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
TT16_ARATH2.113e-1841.61Protein TRANSPARENT TESTA 16 OS=Arabidopsis thalia... [more]
SRFC_DICDI6.798e-1753.16Serum factor response C OS=Dictyostelium discoideu... [more]
AGL31_ARATH2.583e-1639.32Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MAD32_ORYSJ4.406e-1646.00MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2_DROME2.187e-1555.07Myocyte-specific enhancer factor 2 OS=Drosophila m... [more]
MEF2B_HUMAN2.856e-1555.07Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2C_PONAB4.872e-1553.62Myocyte-specific enhancer factor 2C OS=Pongo abeli... [more]
MEF2C_PIG4.872e-1553.62Myocyte-specific enhancer factor 2C OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionC32107B01EF RVDevelopN Citrus clementina cDNA clone C32107B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921590 ID=FC921590; Name=FC921590; organism=Citrus clementina; type=EST; length=649bp
TAACTTTCACTTTCCCTTCTGCTTCTCTCCCTGCTCTGTTCTCATTTTTT
GTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCTGCTGA
AACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACATTCCT
TTGGTTAGATAGTGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCA
GCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGAT
CGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCA
AGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGT
GATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGA
GTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCA
CTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTC
TACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAA
TTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGG
AACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGCAGATCCGA
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