FC921627

Overview
NameFC921627
Unique NameFC921627
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14356 contig Ccv1_Contig14356:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L2_MOUSE (Alanine--glyoxylate aminotransferase 2-like 2 OS=Mus musculus GN=Agxt2l2 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.037e-16
Identity = 44/105 (41.90%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  366 RKQFLGPSIFHYY-QKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            R++ L  S   ++ + P+ I+ G+ QYL+DE GR YLD    +  V  GHCHP V+ A  EQ+ +L +  + YLH  I D+A+ L+  +P  L V YF+NSG+EA
Sbjct:   15 RRRLLSSSCRLFFPEDPVKIIRGQGQYLYDEQGREYLDCINNVAHV--GHCHPTVVQAAHEQNLVL-NTNSRYLHDNIVDYAQRLSETLPEQLSVFYFLNSGSEA 116          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L1_BOVIN (Alanine--glyoxylate aminotransferase 2-like 1 OS=Bos taurus GN=AGXT2L1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = 3
Query:  342 SADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            S  +    R++ +GPS   ++   P+ IV  + QY+FDE G +YLD    +  V  GHCHP+V+ A  +Q +LL +  + +LH  I ++A+ L++ +P  L V YF NSG+EA
Sbjct:    6 SKQETLALRRKHIGPSCKVFFAADPIKIVRAQRQYMFDEKGDQYLDCINNVAHV--GHCHPEVVKAAQKQMELL-NTNSRFLHDNIVEYAKRLSATLPDRLSVCYFTNSGSEA 115          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L1_MOUSE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Mus musculus GN=Agxt2l1 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.674e-15
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  366 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            R++ +GPS   ++   P+ I+  + QY+FDE G RYLD    +  V  GHCHP+V+ A  +Q +LL +  + +LH  I +FA+ L + +P  L V YF NSG+EA
Sbjct:   14 RERHIGPSCKIFFAADPIKIMRAQGQYMFDEKGERYLDCINNVAHV--GHCHPEVVKAAAKQMELL-NTNSRFLHDNIIEFAKRLTATLPQELSVCYFTNSGSEA 115          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L2_HUMAN (Alanine--glyoxylate aminotransferase 2-like 2 OS=Homo sapiens GN=AGXT2L2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 41/113 (36.28%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  339 PSADQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            P AD +  +++         + + P+ IV  + QY++DE G  Y+D  + +  V  GHCHP V+ A  EQ+++L +  + YLH  I D+A+ L+  +P  L V YF+NSG+EA
Sbjct:    7 PKADTLALRQRLISSSCRLFFPEDPVKIVRAQGQYMYDEQGAEYIDCISNVAHV--GHCHPLVVQAAHEQNQVL-NTNSRYLHDNIVDYAQRLSETLPEQLCVFYFLNSGSEA 116          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AGT2L_DROME (Alanine--glyoxylate aminotransferase 2-like OS=Drosophila melanogaster GN=CG8745 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.327e-14
Identity = 46/113 (40.71%), Postives = 62/113 (54.87%), Query Frame = 3
Query:  342 SADQVFQKRKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            S  +  + R Q +G +   +Y+  PL IV G+ QY+FDE G RYLD    +  V  GHCHP+V+ A   Q   +      +LH  +   A  L SKMP  L V +FVNSG+EA
Sbjct:   17 SKTETIKLRNQHIGQACQLFYRSDPLKIVRGQGQYMFDEEGTRYLDCINNVAHV--GHCHPEVVRAGALQMATIS-TNNRFLHDELVQCARTLTSKMPEPLSVCFFVNSGSEA 126          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: AT2L1_DANRE (Alanine--glyoxylate aminotransferase 2-like 1 OS=Danio rerio GN=agxt2l1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.264e-14
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 3
Query:  366 RKQFLGPSIFHYYQK-PLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            RK+ +GPS   ++   P+ IV  K QY+++E   +YLD    +  V  GHCHPDV++A  +Q +LL +  + +LH ++  +A+ L + +P  L V YFVNSG+EA
Sbjct:   15 RKKHVGPSCKVFFDHDPIKIVRAKGQYMYNEKDEKYLDCINNVAHV--GHCHPDVVSAGAKQMELL-NTNSRFLHDSLVLYAQRLQATLPEKLSVCYFVNSGSEA 116          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: ARGD_METKA (Acetylornithine aminotransferase OS=Methanopyrus kandleri GN=argD PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.576e-13
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  399 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEAM 680
            Y + P+ +V G+   ++D+ G  Y+D  AGI     GHCHP V+ A+ EQ + L H + +Y +   A+ A  LA   P +L  V+F NSGTE++
Sbjct:   15 YSRFPVTLVPGEGARVWDDEGNEYIDLVAGIAVNVLGHCHPAVVEAVKEQVERLIHCSNLYYNEPQAEAARLLAEAAPKDLNKVFFCNSGTESV 108          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: ARGD_METMA (Acetylornithine aminotransferase OS=Methanosarcina mazei GN=argD PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.165e-12
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  348 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEAM 680
            D V  K  +++  +   Y ++PL + +GK   + D  G+ Y+D  AGI   + GHCHP V+ AI  Q++ L H + +Y     A+FAE LAS     ++ V+F NSG EA+
Sbjct:   16 DSVIDKDSKYVMQT---YGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAEKLIHVSNLYYTEIQAEFAETLASIT--GMECVFFCNSGAEAV 121          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: ARGD_METAC (Acetylornithine aminotransferase OS=Methanosarcina acetivorans GN=argD PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.794e-11
Identity = 40/111 (36.04%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  348 DQVFQKRKQFLGPSIFHYYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEAM 680
            D V +K  +++  +   Y ++PL + +GK   + D  G+ Y+D  AGI   + GHCHP V+ AI  Q++ L H + +Y     A+FAE LAS     ++ V+F NSG E++
Sbjct:   16 DSVIEKDSKYVMQT---YGRQPLVLSKGKGAVVQDIYGKEYIDCVAGIAVNNVGHCHPTVVKAIQAQAENLIHVSNLYYTEIQAEFAETLASIT--GMERVFFCNSGAESV 121          
BLAST of FC921627 vs. ExPASy Swiss-Prot
Match: ARGD_NITEU (Acetylornithine aminotransferase OS=Nitrosomonas europaea GN=argD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 3
Query:  399 YYQKPLNIVEGKMQYLFDENGRRYLDAFAGIVTVSCGHCHPDVLNAIFEQSKLLQHATTIYLHHAIADFAEALASKMPGNLKVVYFVNSGTEA 677
            Y + P+  V+G+  +L+D+ G RYLDA +GI     GHCHP ++ A+ EQ   L H + +Y        A+ L S     L+  +F NSG EA
Sbjct:    8 YARLPVTFVKGEGVWLWDDQGNRYLDALSGIAVCGVGHCHPVLVKALCEQVSTLIHTSNVYHIQHQERLADRLTSL--SGLEKAFFCNSGAEA 98          
The following BLAST results are available for this feature:
BLAST of FC921627 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AT2L2_MOUSE7.037e-1641.90Alanine--glyoxylate aminotransferase 2-like 2 OS=M... [more]
AT2L1_BOVIN2.047e-1538.05Alanine--glyoxylate aminotransferase 2-like 1 OS=B... [more]
AT2L1_MOUSE2.674e-1540.95Alanine--glyoxylate aminotransferase 2-like 1 OS=M... [more]
AT2L2_HUMAN7.780e-1536.28Alanine--glyoxylate aminotransferase 2-like 2 OS=H... [more]
AGT2L_DROME1.327e-1440.71Alanine--glyoxylate aminotransferase 2-like OS=Dro... [more]
AT2L1_DANRE2.264e-1440.00Alanine--glyoxylate aminotransferase 2-like 1 OS=D... [more]
ARGD_METKA5.576e-1338.30Acetylornithine aminotransferase OS=Methanopyrus k... [more]
ARGD_METMA6.165e-1236.94Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_METAC1.794e-1136.04Acetylornithine aminotransferase OS=Methanosarcina... [more]
ARGD_NITEU8.902e-1137.63Acetylornithine aminotransferase OS=Nitrosomonas e... [more]

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Properties
Property NameValue
Genbank descriptionC32107E04EF RVDevelopN Citrus clementina cDNA clone C32107E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921627 ID=FC921627; Name=FC921627; organism=Citrus clementina; type=EST; length=725bp
GACACTCACTTAACTTTGAAGTTAACTGTTCTGTTCAGTTAGCGTTCCAT
TTCCATTCAACTTCCATTGTCGATTTTTCAATCCATACTTTGGCAAACAA
ATAAAAATTCGAAATATTTTCATCAAAAAAAAAAAAATCTGTTTTCTTTC
TTTATGTCTGCATCATCATCCATCCAATGGCGTTTTTGCAGAGACAAATC
TTGAAAAGAACTGTGAAGGAATCCAAAGCCAAGTTGAATATTTGCACTTC
TTTCTCAACTGCTGCTTCTGCTTCTGCTGTTGCTACTACTCCTCCGCAGC
TGCCACCTTTTGATCATGATCCTAAACCTTACACGGGTCCCTCGGCTGAT
CAAGTGTTTCAAAAGCGAAAGCAATTTCTGGGTCCCTCTATTTTTCATTA
TTATCAAAAACCTCTTAATATTGTTGAAGGTAAGATGCAGTATCTGTTTG
ATGAGAATGGTAGGCGGTATTTGGATGCATTTGCTGGAATAGTTACTGTG
TCCTGTGGTCATTGTCATCCTGATGTTCTGAATGCTATTTTTGAGCAAAG
CAAGCTTCTCCAGCATGCGACAACCATATACTTGCACCATGCCATAGCTG
ATTTTGCAGAGGCTTTAGCATCGAAAATGCCTGGAAACCTAAAGGTTGTA
TATTTTGTCAATTCTGGGACCGAAGCAATGAGTTAGCATGCTAATGGCCA
ACTTTCACAGGTAATCTGGCATGAT
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