FC921632

Overview
NameFC921632
Unique NameFC921632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_PYRFU (50S ribosomal protein L19e OS=Pyrococcus furiosus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.724e-25
Identity = 54/138 (39.13%), Postives = 85/138 (61.59%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVL 473
            M +LK+Q+R++A +LKCG  ++W+DP  +++++ A +R++I++L+K+G I +KP K  SR R +   E K+KGRH G G RKG + AR+  K               K +  KKID+  Y  +Y++ KG  FKNK  L
Sbjct:    1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGSRKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQL 138          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_MAIZE (60S ribosomal protein L19 (Fragment) OS=Zea mays GN=RPL19 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.242e-24
Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 3
Query:   69 LKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRR 254
            LKLQKRL+AS LKCG+GKVWLDPNEV+EISMANSRQNIRKLVKDGFII+KP KIHSRSR ++
Sbjct:    1 LKLQKRLAASYLKCGKGKVWLDPNEVSEISMANSRQNIRKLVKDGFIIKKPHKIHSRSRCKK 62          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_ARCFU (50S ribosomal protein L19e OS=Archaeoglobus fulgidus GN=rpl19e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.784e-22
Identity = 52/134 (38.81%), Postives = 79/134 (58.96%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKN 461
            ++ L LQ+RL+ASVLKCG  +VW DP  + +I+ A ++Q+IR+L++ G I RKP    SR+R+ + K  KRKGR  G+G RKG + AR+P K               + +    +D+  Y  +Y K KG  F++
Sbjct:    3 VMDLSLQRRLAASVLKCGENRVWFDPAALEDIATAATKQDIRELIEQGVIKRKPVNGVSRARINKRKLQKRKGRRRGHGSRKGAKGARMPRKRMWILRIRALRKALRQMKAEGVVDRRTYRILYRKAKGGEFRS 136          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_METJA (50S ribosomal protein L19e OS=Methanocaldococcus jannaschii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 48/135 (35.56%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNK 464
            ++ + +Q+R++A +LKCG  +VW+DP +++ + MA S+ +IR L+K+G I +K  K  S +RV+++KE ++KGR  G G R+G   AR P K               + R+S KID+ +Y  +Y   KG  F+++
Sbjct:    3 IMDVSVQRRMAAEILKCGIERVWIDPTQLDRVKMAMSKDDIRALIKEGVIKKKQKKGISSARVKKLKEQRKKGRRRGPGSRRGAAGARTPPKERWMATIRALRKTLKQLRDSGKIDRKVYRKLYRMAKGGAFRSR 137          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_METVA (50S ribosomal protein L19e OS=Methanococcus vannielii GN=rpl19e PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20
Identity = 45/134 (33.58%), Postives = 78/134 (58.21%), Query Frame = 3
Query:   63 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNK 464
            + +  Q+R++A+VL CG  +VW+DP  + ++ MA ++ +IR L+ DG I++K  K  S +R + ++E KRKG+  G G R+G + AR P K               + RE++KI++  Y  +Y   KG  F+++
Sbjct:    1 MDVSTQRRIAAAVLDCGIDRVWVDPENLEKVKMAITKDDIRLLINDGIIVKKQEKGISSARKKEVQEQKRKGKRKGPGSRRGAKGARTPKKEKWMNTIRPLRTLLKELRENEKIERSSYRKLYRMAKGGAFRSR 134          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_METTH (50S ribosomal protein L19e OS=Methanobacterium thermoautotrophicum GN=rpl19e PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20
Identity = 48/134 (35.82%), Postives = 77/134 (57.46%), Query Frame = 3
Query:   63 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNK 464
            ++L  QKRL+A +LK G  ++W+DP  ++E+S A +R  +++L+KDG I  KP K  S  R +++ + K+KGR  G G  KG + AR P K               + R++++I+K  Y  +Y   KG  FK+K
Sbjct:    1 MNLTTQKRLAADILKVGVNRIWIDPERIDEVSRAITRDGVKQLIKDGAIKAKPKKGISSYRSKKIAQQKKKGRRRGPGSIKGAKGARRPKKDEWMTTIRALRKDLKEMRDNREINKSTYRKLYKMAKGGAFKSK 134          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_HALMA (50S ribosomal protein L19e OS=Haloarcula marismortui GN=rpl19e PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 43/132 (32.58%), Postives = 64/132 (48.48%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVF 455
            M  L  QKRL+A VL  G+ +VW +P    +I+ A +R+++R+LV +G I  K  K +SR R R  ++ +  G   G G RKG   AR  +K               + R+   +    Y D+Y K  G  F
Sbjct:    1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGSRKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEF 132          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19E_HALSA (50S ribosomal protein L19e OS=Halobacterium salinarium GN=rpl19e PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 47/145 (32.41%), Postives = 68/145 (46.90%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKS 494
            M  L  QKRL+A VL  G  +VW DP+  +EI+ A +R++IR+LV DG I  + T+ +SR R R     +  G   G G RKG   AR   K               + R+   +    Y +MY    G  F + R L   + ++
Sbjct:    1 MSDLSAQKRLAADVLDVGENRVWFDPDAQSEIADAITREDIRELVADGTIDAEDTQGNSRGRARERDAKESYGHKKGAGSRKGKAGARQNEKREYVAGIRAQRQQLRELRDDGTLSPAQYREMYNMANGGEFDSVRRLTNYVEEN 145          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_SULAC (50S ribosomal protein L19e OS=Sulfolobus acidocaldarius GN=rpl19e PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 47/149 (31.54%), Postives = 72/149 (48.32%), Query Frame = 3
Query:   60 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRVRRMKEAKR-KGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKN----KRVLMESIHK 491
            M   +LQ+RL+A +   G   +  +P  + E+  A +R++I+KL+K+  +I  P +  S  R++  K  +R KG    +G RKG   AR   K                 R++  IDKH Y  +Y + KGN FKN    K  L +  HK
Sbjct:    1 MPEFQLQRRLAADIAGVGLNNIKFNPERLEEVEEALTREDIKKLIKERAVIVNPKRGISSGRLKERKHKRRSKGEGRKHGSRKGKSGARTGDKEIWINKIRKIRRYIRWLRDNNVIDKHTYRLLYKRAKGNYFKNLSDVKSYLRQMGHK 149          
BLAST of FC921632 vs. ExPASy Swiss-Prot
Match: RL19_AERPE (50S ribosomal protein L19e OS=Aeropyrum pernix GN=rpl19e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.085e-11
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = 3
Query:   72 KLQKRLSASVLKCGRGKVWL--DPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHS--RSRVRRMKEAKRKGRHSGYGKRKGTREARLPTKIXXXXXXXXXXXXXXKYRESKKIDKHMYHDMYMKVKGNVFKN 461
            + Q+RL+A +L  G  ++W+  DP    EI  A ++ ++R L+K G I   P K ++   S+VR ++  +RKGR  G G+RKG   ARL  K                 R+ + ID+  Y  +YM  KG  F++
Sbjct:    4 RFQRRLAAEILGVGESRIWISPDPELREEIEGAVTKADVRALIKRGVIKVLPEKGNAGHASKVRHLQ--RRKGRRRGMGRRKGVATARLDPKERWMHRIRKIRRYLRYLRDKQVIDRKTYRRLYMLAKGGTFRD 135          
The following BLAST results are available for this feature:
BLAST of FC921632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL19_PYRFU1.724e-2539.1350S ribosomal protein L19e OS=Pyrococcus furiosus ... [more]
RL19_MAIZE7.242e-2485.4860S ribosomal protein L19 (Fragment) OS=Zea mays G... [more]
RL19_ARCFU1.784e-2238.8150S ribosomal protein L19e OS=Archaeoglobus fulgid... [more]
RL19_METJA8.852e-2235.5650S ribosomal protein L19e OS=Methanocaldococcus j... [more]
RL19_METVA8.286e-2033.5850S ribosomal protein L19e OS=Methanococcus vannie... [more]
RL19_METTH8.286e-2035.8250S ribosomal protein L19e OS=Methanobacterium the... [more]
RL19_HALMA1.513e-1332.5850S ribosomal protein L19e OS=Haloarcula marismort... [more]
RL19E_HALSA1.513e-1332.4150S ribosomal protein L19e OS=Halobacterium salina... [more]
RL19_SULAC5.751e-1331.5450S ribosomal protein L19e OS=Sulfolobus acidocald... [more]
RL19_AERPE1.085e-1132.8450S ribosomal protein L19e OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32107E10EF RVDevelopN Citrus clementina cDNA clone C32107E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921632 ID=FC921632; Name=FC921632; organism=Citrus clementina; type=EST; length=738bp
GACACTTGTTGGTTGGCCACCGCTCGCGAGAGAGAGAGGGGGAGAGAAGA
GAAGAGAAAATGGTGTCGTTGAAGTTACAGAAGCGACTCTCCGCTAGCGT
CCTCAAGTGCGGACGTGGCAAGGTCTGGCTTGACCCTAATGAGGTCAACG
AAATCTCCATGGCCAACTCCAGGCAGAACATTAGGAAATTGGTGAAGGAT
GGTTTCATCATCAGGAAGCCAACAAAGATCCACTCCCGTTCTCGTGTTCG
CAGAATGAAGGAAGCCAAGAGGAAGGGCCGTCACTCTGGATATGGTAAGA
GAAAGGGTACTAGGGAGGCGAGGCTTCCCACCAAAATCCTCTGGATGAGA
AGGATGCGTGTGCTCAGGCGGTTGCTCCGCAAATACCGTGAGTCGAAGAA
AATTGACAAGCACATGTACCATGACATGTACATGAAGGTCAAGGGTAATG
TATTTAAGAACAAGCGTGTCCTCATGGAGAGTATCCACAAGTCAAAGGCT
GAGAAGGCAAGAGAGAAGACTCTTTCTGACCAGTTTGAGGCTAAGCGCGC
CAAGAACAAGGCCAGCAGGGAGAGAAAGCTGGCCAGGAGAGAAGAGCGAC
TAGCACAGGGACCTGGAGAGAAGGCAGTACCAGCACCCCAACCGGCTGAA
GGAGCTAGGAAAGCTAAGAAGTGATTGCTGATACATCGATGATGGAGACT
GAAGAATGATACTTATATATGTATGTGGNTCTGGTTCT
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