FC921633
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18 Identity = 62/226 (27.43%), Postives = 106/226 (46.90%), Query Frame = 2 Query: 53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDI 688 M + + + +GQ G Q+G W+L EH ++ K G DDA ++FF G G + RAV +D+E V++E+ G R +F +QLI+ + NN+A GH G + L+++RK A+ C LQ F + H++ ++ + + VYPS + + PYNS+L+ L EH D + + +++++DI Sbjct: 1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17 Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 2 Query: 65 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVID-EVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLSTHSLLEHTDVSVLL*HEAIY 682 +++H+GQ G Q+ A W+ EHGI GQ + + +D + F + +VPRAV +DLEP VI+ +++ + LF+ + + A NN+A G Y G+E+ + +D I + A+N L G L H+V + KK ++V+ + ST VV PYN VLS L+E+ D V+L + A++ Sbjct: 8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALH 213
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16 Identity = 65/238 (27.31%), Postives = 110/238 (46.22%), Query Frame = 2 Query: 59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG------------------------QMLSDKTVGGG---DDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPE--QLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679 E I++ +GQ G QVG W+ EHGIQ DG Q +T G +D FF+ + + + PR++ +D+EP+VI ++ + +F+P L + AANN+ G Y G E + L+ I + D C L F +FH+V YG K L F+++PS + S VV+PYN++L+ L++++D + + ++++ Sbjct: 4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14 Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 2 Query: 200 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679 + FF + +PR++ +DLEP VI+ ++ YR L++ E + + A NN+A G++ G++ VD +D + + AD L+GF++ H++ Y KK ++V+P+ QV TS VV+PYNS+L+ L + D V+L + A+ Sbjct: 1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 162
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2) HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11 Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 2 Query: 257 DLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679 DLEP V+ ++ Y+ +++PE K+ A NN+ G Y++G+++ + D I + AD L+GF++ H++ + KK ++V+P+ Q VV+PYNS+LS L ++ D V+L + A+ Sbjct: 3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGAL 144
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11 Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = 2 Query: 530 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDICRRSL 703 +Y + L F+V+PSP+VS +VVEPYN+ LS H L+E+ DV ++L +EA+YDIC R+L Sbjct: 26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTL 83
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11 Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2 Query: 65 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDE-----VRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDICRR 697 +++ +GQ G Q+G ++ LY H P G + + FFSE G + RAV +D+EP VI++ ++G ++ H KE + NN+A G+ G + ++ I+K + C L GF + ++ Y K+ ++P +V+ YNSVL+ L +D ++ ++AI+ IC + Sbjct: 4 VTVQLGQCGNQIGFEVFDALYSDSHC--PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAK 215 The following BLAST results are available for this feature:
BLAST of FC921633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 417
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921633 ID=FC921633; Name=FC921633; organism=Citrus clementina; type=EST; length=703bpback to top |