FC921633

Overview
NameFC921633
Unique NameFC921633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBE_MOUSE (Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.395e-18
Identity = 62/226 (27.43%), Postives = 106/226 (46.90%), Query Frame = 2
Query:   53 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSET-----GAGKHVP---------RAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDI 688
            M + + + +GQ G Q+G   W+L   EH        ++ K  G  DDA ++FF        G G  +          RAV +D+E  V++E+  G  R +F  +QLI+    + NN+A GH   G    +  L+++RK A+ C  LQ F + H++                  ++ +  +    VYPS +    +  PYNS+L+   L EH D  + + +++++DI
Sbjct:    1 MTQSVVVQVGQCGNQIGCCFWDLALREHAA------VNQK--GIYDDAISSFFRNVDTRAVGDGGSISKGRISSLKARAVLIDMEEGVVNEILQGPLRDVFDSKQLITDISGSGNNWAVGHKVFGCLYREQILEKLRKSAEQCDCLQCFFIIHSMGGGTGSGLGTFLLKVLEDEFPEVYRFVTAVYPSSE-DDVITSPYNSMLAMKELNEHADCVLPIDNQSLFDI 217          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_CAEEL (Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.093e-17
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 2
Query:   65 ISIHIGQAGIQVGNACWELYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVID-EVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS-VVEPYNSVLSTHSLLEHTDVSVLL*HEAIY 682
            +++H+GQ G Q+  A W+    EHGI   GQ   +  +   +D  +  F +     +VPRAV +DLEP VI+  +++  +  LF+ + +        A NN+A G Y  G+E+ +  +D I + A+N   L G L  H+V                   + KK    ++V+ +   ST  VV PYN VLS   L+E+ D  V+L + A++
Sbjct:    8 MTVHVGQCGNQLAQAFWKSMVDEHGINERGQTTHEDDM---NDKKDLLFYQADDDHYVPRAVLVDLEPRVINGMMQSPNFSNLFNTDNIFMSDHGGGAGNNWASG-YCQGQEVQEKIMDIIIREAENTNNLDGILFTHSVSGGTGSGTGSLLLERLREAFPKKVIQTYSVFANSDTSTDVVVHPYNWVLSMQRLIENPDHVVVLDNAALH 213          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_CANAL (Tubulin gamma chain OS=Candida albicans GN=TUB4 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 65/238 (27.31%), Postives = 110/238 (46.22%), Query Frame = 2
Query:   59 ECISIHIGQAGIQVGNACWELYCLEHGIQPDG------------------------QMLSDKTVGGG---DDAFNTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPE--QLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLG-FTVYPSPQ-VSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679
            E I++ +GQ G QVG   W+    EHGIQ DG                        Q    +T   G   +D    FF+ + +  + PR++ +D+EP+VI   ++ +   +F+P    L +    AANN+  G Y  G E  +  L+ I +  D C  L  F +FH+V                   YG K  L  F+++PS +  S  VV+PYN++L+   L++++D + +  ++++
Sbjct:    4 ETITLQVGQCGNQVGLQYWQQLATEHGIQSDGSSTPYPKDINDLQLQELNNSGSSPQSYPQQTKPNGKYRNDHPELFFTLSDSNTYTPRSILIDMEPSVI--AKSTSALPMFNPRNVHLSNQGNGAANNWING-YKYGTEEEETLLNLIDREVDKCDNLSNFQLFHSVAGGTGSGVGSKMLEVISDRYGHKKLLNTFSIFPSNEDTSDVVVQPYNTILTLKRLIDYSDATFVFHNDSL 238          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG3_MAIZE (Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.829e-14
Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = 2
Query:  200 NTFFSETGAGKHVPRAVFLDLEPTVIDEVRTGAYRQLFHPEQLISGKE--DAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTS--VVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679
            + FF +      +PR++ +DLEP VI+ ++   YR L++ E +   +    A NN+A G++  G++ VD  +D + + AD    L+GF++ H++                   Y KK    ++V+P+ QV TS  VV+PYNS+L+   L  + D  V+L + A+
Sbjct:    1 DVFFYQADDQHFIPRSLLIDLEPRVINGIQNSEYRNLYNHENIFVAEHGGGAGNNWASGYHQ-GEQFVDDIMDMVDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLETLNDRYSKKLVQTYSVFPN-QVETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTAL 162          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBG_COCHE (Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus GN=TUB4 PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.314e-11
Identity = 41/143 (28.67%), Postives = 74/143 (51.75%), Query Frame = 2
Query:  257 DLEPTVIDEVRTGAYRQLFHPEQLISGKED--AANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAI 679
            DLEP V+  ++   Y+ +++PE     K+   A NN+  G Y++G+++ +   D I + AD    L+GF++ H++                   + KK    ++V+P+ Q    VV+PYNS+LS   L ++ D  V+L + A+
Sbjct:    3 DLEPRVLHSIQASPYKNIYNPENFYIHKDGTGAGNNWGMG-YSMGEQVHEDIWDMIDREADGSDSLEGFMMLHSIAGGTGSGLGSYMLERLNDRFPKKLIQTYSVFPNTQDGDIVVQPYNSLLSMRRLTQNADSVVVLDNGAL 144          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBB1_DAUCA (Tubulin beta-1 chain (Fragment) OS=Daucus carota GN=TUBB1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.823e-11
Identity = 31/58 (53.45%), Postives = 45/58 (77.59%), Query Frame = 2
Query:  530 DYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDICRRSL 703
            +Y  +  L F+V+PSP+VS +VVEPYN+ LS H L+E+ DV ++L +EA+YDIC R+L
Sbjct:   26 EYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADVCMVLDNEALYDICFRTL 83          
BLAST of FC921633 vs. ExPASy Swiss-Prot
Match: TBD_CANFA (Tubulin delta chain OS=Canis familiaris GN=TUBD1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 53/217 (24.42%), Postives = 95/217 (43.78%), Query Frame = 2
Query:   65 ISIHIGQAGIQVGNACWE-LYCLEHGIQPDGQMLSDKTVGGGDDAFNTFFSETGAGKHVPRAVFLDLEPTVIDE-----VRTGAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVXXXXXXXXXXXXXXXXXVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVSVLL*HEAIYDICRR 697
            +++ +GQ G Q+G   ++ LY   H   P G     +       +   FFSE   G  + RAV +D+EP VI++      ++G ++   H       KE + NN+A G+   G    +  ++ I+K  + C  L GF +  ++                   Y    K+   ++P       +V+ YNSVL+   L   +D  ++  ++AI+ IC +
Sbjct:    4 VTVQLGQCGNQIGFEVFDALYSDSHC--PQGLCSERENEAYQASSKERFFSEEENGVSIARAVLVDMEPKVINQTLSKAAQSGQWKYAQH--SCFCQKEGSGNNWAYGYSVHGPRHEESIMNLIQKEVEKCDSLSGFFIIMSMAGGTGSGLGAFVTQNLQDQYSNSLKMNQIIWPY-GTGEVIVQNYNSVLTLSHLYRSSDALLVHENDAIHKICAK 215          
The following BLAST results are available for this feature:
BLAST of FC921633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
TBE_MOUSE9.395e-1827.43Tubulin epsilon chain OS=Mus musculus GN=Tube1 PE=... [more]
TBG_CAEEL2.093e-1730.48Tubulin gamma chain OS=Caenorhabditis elegans GN=t... [more]
TBG_CANAL1.039e-1627.31Tubulin gamma chain OS=Candida albicans GN=TUB4 PE... [more]
TBG3_MAIZE2.829e-1430.49Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TU... [more]
TBG_COCHE1.314e-1128.67Tubulin gamma chain (Fragment) OS=Cochliobolus het... [more]
TBB1_DAUCA3.823e-1153.45Tubulin beta-1 chain (Fragment) OS=Daucus carota G... [more]
TBD_CANFA4.993e-1124.42Tubulin delta chain OS=Canis familiaris GN=TUBD1 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32107E11EF RVDevelopN Citrus clementina cDNA clone C32107E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921633 ID=FC921633; Name=FC921633; organism=Citrus clementina; type=EST; length=703bp
GACTCTTAATCTCGCAATTCCCGACTCAAATCTCTAACAAAATCACACAA
GAATGAGAGAATGCATCTCAATTCACATCGGCCAGGCCGGTATCCAGGTT
GGTAATGCCTGCTGGGAGCTCTATTGCCTCGAACATGGCATTCAGCCTGA
TGGGCAAATGTTAAGTGACAAAACAGTTGGAGGCGGAGATGATGCTTTCA
ACACATTCTTCAGTGAGACCGGCGCCGGAAAGCACGTGCCACGCGCCGTG
TTTTTGGACCTTGAACCAACTGTAATCGATGAAGTGAGGACTGGCGCCTA
CCGTCAGTTGTTTCACCCGGAGCAACTCATTAGCGGCAAAGAAGATGCTG
CTAACAACTTTGCCAGAGGCCACTACACAATTGGGAAAGAGATTGTGGAT
TTGTGCCTTGATAGGATCAGGAAGTTAGCTGATAACTGTACCGGTCTACA
AGGGTTCCTCGTGTTCCACGCGGTTGGTGGAGGAACAGGATCCGGGCTCG
GGTCTTTGCTCCTTGAGAGGCTTTCTGTTGATTACGGCAAGAAATCGAAA
CTGGGATTTACAGTTTACCCTTCACCTCAAGTTTCAACCTCAGTTGTTGA
GCCTTACAACAGCGTTTTGTCCACTCACTCTCTGTTAGAACACACTGACG
TTTCTGTGTTGCTTTGACATGAAGCAATCTACGATATTTGTCGACGCTCT
CTT
back to top