FC921634

Overview
NameFC921634
Unique NameFC921634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length724
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT1_PANPA (Beta-1,3-galactosyltransferase 1 OS=Pan paniscus GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  278 MLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA----ICIFGTKILPAKYIMKTDDDAFVRIDEVLXNL---KEKPSNGLLFGLMSYDSSPQKRQRQQWYISNEEWPHSS 724
            ++I + +T   F+ R A+R +W      +   +A  F +G + +  +N  + +E+Q + DI +  F+D Y  ++LKT+     +  F +K   AKY+MKTD D FV +D ++  L     KP      G +  +  P +  R +WY+  + +P S+
Sbjct:   80 LVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSK---AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSN 231          
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT1_MOUSE (Beta-1,3-galactosyltransferase 1 OS=Mus musculus GN=B3galt1 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  278 MLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA----ICIFGTKILPAKYIMKTDDDAFVRIDEVLXNL---KEKPSNGLLFGLMSYDSSPQKRQRQQWYISNEEWPHSS 724
            ++I + +T   F+ R A+R +W      +   +A  F +G + +  +N  + +E+Q + DI +  F+D Y  ++LKT+     +  F +K   AKY+MKTD D FV +D ++  L     KP      G +  +  P +  R +WY+  + +P S+
Sbjct:   80 LVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSK---AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSN 231          
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT1_HUMAN (Beta-1,3-galactosyltransferase 1 OS=Homo sapiens GN=B3GALT1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  278 MLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA----ICIFGTKILPAKYIMKTDDDAFVRIDEVLXNL---KEKPSNGLLFGLMSYDSSPQKRQRQQWYISNEEWPHSS 724
            ++I + +T   F+ R A+R +W      +   +A  F +G + +  +N  + +E+Q + DI +  F+D Y  ++LKT+     +  F +K   AKY+MKTD D FV +D ++  L     KP      G +  +  P +  R +WY+  + +P S+
Sbjct:   80 LVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSK---AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSN 231          
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT1_GORGO (Beta-1,3-galactosyltransferase 1 OS=Gorilla gorilla gorilla GN=B3GALT1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.373e-11
Identity = 44/156 (28.21%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  278 MLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIA----ICIFGTKILPAKYIMKTDDDAFVRIDEVLXNL---KEKPSNGLLFGLMSYDSSPQKRQRQQWYISNEEWPHSS 724
            ++I + +T   F+ R A+R +W      +   +A  F +G + +  +N  + +E+Q + DI +  F+D Y  ++LKT+     +  F +K   AKY+MKTD D FV +D ++  L     KP      G +  +  P +  R +WY+  + +P S+
Sbjct:   80 LVILISTTHKEFDARQAIRETWGDENNFKGIKIATLFLLGKNADPVLNQMVEQESQIFHDIIVEDFIDSYHNLTLKTLMGMRWVATFCSK---AKYVMKTDSDIFVNMDNLIYKLLKPSTKPRRRYFTGYV-INGGPIRDVRSKWYMPRDLYPDSN 231          
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT5_GORGO (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gorilla gorilla gorilla GN=B3GALT5 PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.343e-11
Identity = 47/184 (25.54%), Postives = 90/184 (48.91%), Query Frame = 2
Query:  176 FSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRL--VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILP-AKYIMKTDDDAFVRIDEVLXNLKEKPSNGLLF-GLMSYDSSPQKRQRQQWYISNEEWP 715
            FS ++      + F +  DV  LK P    ++    +++ V S+      RMA+R++W +   V+   +   F +G   +     E+ +E++ +GDI    F+D Y  ++LKT+    +  +  P A ++MKTD D F+ +D +   L +K      F G +  +  P ++   +W++S  E+P
Sbjct:   23 FSMYSLNPFKEQSFVYKKDVNFLKLPDTDCRQTPPFLVLLVTSSHKQLAERMAIRQTWGKERTVKGKQLKTFFLLGTTSSAAETKEVDQESRRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYP 206          
BLAST of FC921634 vs. ExPASy Swiss-Prot
Match: B3GT5_HUMAN (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.816e-11
Identity = 47/184 (25.54%), Postives = 89/184 (48.37%), Query Frame = 2
Query:  176 FSAFAEGLPVSEDFDFIVDVEHLKAPLISRKRL--VMLIGVFSTGNNFERRMALRRSWMQYPAVRSGDVAVRFFIGLHKNRQVNFELWKEAQAYGDIQIMPFVDYYSLISLKTIAICIFGTKILP-AKYIMKTDDDAFVRIDEVLXNLKEKPSNGLLF-GLMSYDSSPQKRQRQQWYISNEEWP 715
            FS ++      + F +  D   LK P    ++    +++ V S+      RMA+R++W +   V+   +   F +G   +     E+ +E+Q +GDI    F+D Y  ++LKT+    +  +  P A ++MKTD D F+ +D +   L +K      F G +  +  P ++   +W++S  E+P
Sbjct:   23 FSMYSLNPFKEQSFVYKKDGNFLKLPDTDCRQTPPFLVLLVTSSHKQLAERMAIRQTWGKERMVKGKQLKTFFLLGTTSSAAETKEVDQESQRHGDIIQKDFLDVYYNLTLKTMMGIEWVHRFCPQAAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYP 206          
The following BLAST results are available for this feature:
BLAST of FC921634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
B3GT1_PANPA1.373e-1128.21Beta-1,3-galactosyltransferase 1 OS=Pan paniscus G... [more]
B3GT1_MOUSE1.373e-1128.21Beta-1,3-galactosyltransferase 1 OS=Mus musculus G... [more]
B3GT1_HUMAN1.373e-1128.21Beta-1,3-galactosyltransferase 1 OS=Homo sapiens G... [more]
B3GT1_GORGO1.373e-1128.21Beta-1,3-galactosyltransferase 1 OS=Gorilla gorill... [more]
B3GT5_GORGO2.343e-1125.54Beta-1,3-galactosyltransferase 5 (Fragment) OS=Gor... [more]
B3GT5_HUMAN6.816e-1125.54Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]

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Properties
Property NameValue
Genbank descriptionC32107E12EF RVDevelopN Citrus clementina cDNA clone C32107E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921634 ID=FC921634; Name=FC921634; organism=Citrus clementina; type=EST; length=724bp
ATGAACCTCTAACTTCCCATTTGTGGATGGGAATCCGTTCACCACCACAA
TATGGGTTGGTTTGGATGGTTTCCATATGACTGTGAATGGAAGGCACGAA
ACATCGTTAGCATATAGGGAGAAACTCGAACCATGGTCGGTTACTGGAGT
TAAAGTGGCCGGTGGTGTGGATCTATTTTCTGCCTTTGCTGAAGGCTTGC
CTGTGTCTGAAGACTTTGATTTTATAGTTGATGTTGAACACCTCAAAGCT
CCCTTGATTTCCAGGAAAAGACTTGTAATGTTGATAGGGGTTTTCTCTAC
TGGAAATAATTTTGAGCGTCGTATGGCACTGAGAAGATCTTGGATGCAGT
ACCCAGCTGTACGGTCTGGGGATGTAGCTGTCCGGTTTTTCATTGGCCTT
CACAAGAACAGGCAAGTCAATTTTGAACTATGGAAAGAAGCTCAAGCATA
TGGGGATATCCAAATAATGCCTTTTGTTGATTATTATAGCCTAATCAGTC
TAAAAACAATTGCAATTTGCATTTTCGGGACCAAGATCCTCCCTGCTAAA
TATATCATGAAAACCGATGATGATGCTTTTGTTAGAATTGATGAAGTTCT
CTNCAACCTCAAGGAGAAACCATCTAATGGCCTCTTATTCGGTCTTATGT
CTTATGATTCATCACCTCAGAAGAGACAAAGACAGCAATGGTATATCAGT
AATGAGGAATGGCCGCATTCCTCA
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