FC921635

Overview
NameFC921635
Unique NameFC921635
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_EIMTE (Tubulin beta chain OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.456e-98
Identity = 170/211 (80.57%), Postives = 186/211 (88.15%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+HVQGGQCGNQIG+KFWEV+ DEHGI PTG Y G SDLQLER++V+YNEA+ GR+VPRAVLMDLEPGTMDSVR+GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQV H              ISK+REEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDIC
Sbjct:    1 MREIVHVQGGQCGNQIGAKFWEVISDEHGIAPTGTYKGDSDLQLERISVFYNEATGGRYVPRAVLMDLEPGTMDSVRSGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQVTHSLGGGTGSGMGTLLISKVREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB6_ECTVR (Tubulin beta-6 chain OS=Ectocarpus variabilis GN=TUBB6 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 4.188e-98
Identity = 167/211 (79.15%), Postives = 184/211 (87.20%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+HVQ GQCGNQIGSKFWEV+ DEHGIDPTGRY G SDLQLER+N Y+NEA+ GR+VPRA+LMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CD LQGFQ+ H              ISK+REEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENAD+C  LDNEALYDIC
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGRYHGDSDLQLERINCYFNEATAGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRIMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_PLAFA (Tubulin beta chain OS=Plasmodium falciparum PE=3 SV=1)

HSP 1 Score: 357.066 bits (915), Expect = 5.470e-98
Identity = 168/211 (79.62%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDP+G Y G SDLQLERV+V+YNEA+ GR+VPRA+LMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELIDAVLDV+RKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDIC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPSGTYSGDSDLQLERVDVFYNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDAVLDVLRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB1_PHYPO (Tubulin beta-1 chain OS=Physarum polycephalum GN=BETA PE=1 SV=4)

HSP 1 Score: 356.681 bits (914), Expect = 7.144e-98
Identity = 169/210 (80.48%), Postives = 184/210 (87.62%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 707
            MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEA+ G++VPRAVL+DLEPGTMDSVR GP+GQIFRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDRMM TFSV PSPKVSDTVVEPYNATLSVHQLVENADE M +DNEALYDI
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGESDLQLERINVYYNEATGGKYVPRAVLVDLEPGTMDSVRAGPFGQIFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQIAHSLGGGTGSGMGTLLISKIREEYPDRMMCTFSVVPSPKVSDTVVEPYNATLSVHQLVENADEVMCIDNEALYDI 210          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_ACHKL (Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.219e-97
Identity = 168/211 (79.62%), Postives = 185/211 (87.68%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MRE++H+QGGQCGNQIG+KFWEV+ DEHG+DPTG Y G SDLQLER+NVYYNEA+ G +VPRA+LMDLEPGTMDSVR GPYGQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENADE M LDNEALYDIC
Sbjct:    1 MRELVHIQGGQCGNQIGAKFWEVISDEHGVDPTGSYHGDSDLQLERINVYYNEAT-GTYVPRAILMDLEPGTMDSVRAGPYGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMCTYSVCPSPKVSDTVVEPYNATLSVHQLVENADEVMCLDNEALYDIC 210          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_TRYCR (Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2)

HSP 1 Score: 354.755 bits (909), Expect = 2.715e-97
Identity = 165/211 (78.20%), Postives = 184/211 (87.20%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+ VQ GQCGNQIGSKFWEV+ DEHG+DPTG Y G SDLQLER+NVY++EA+ GR+VPRAVL+DLEPGTMDSVR GPYGQIFRPDNF+FGQSGAGNNWAKGHYTEGAELID+VLDV RKEAE+CDCLQGFQ+CH              ISK+REEYPDR+M+TFS+ PSPKVSDTVVEPYN TLSVHQLVEN+DE M +DNEALYDIC
Sbjct:    1 MREIVCVQAGQCGNQIGSKFWEVISDEHGVDPTGTYQGDSDLQLERINVYFDEATGGRYVPRAVLIDLEPGTMDSVRAGPYGQIFRPDNFIFGQSGAGNNWAKGHYTEGAELIDSVLDVCRKEAESCDCLQGFQICHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSIIPSPKVSDTVVEPYNTTLSVHQLVENSDESMCIDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB2_ECHMU (Tubulin beta-2 chain OS=Echinococcus multilocularis GN=TUB-2 PE=3 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.546e-97
Identity = 165/211 (78.20%), Postives = 184/211 (87.20%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+H+Q GQCGNQIG+KFWEV+ DEHGIDPTG Y G SDLQLER+NVYYNEAS G++VPRA+L+DLEPGTMDSVR GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDV+RKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M+T+SV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDIC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAILVDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB1_NOTCO (Tubulin beta-1 chain OS=Notothenia coriiceps neglecta GN=tubb1 PE=1 SV=1)

HSP 1 Score: 354.369 bits (908), Expect = 3.546e-97
Identity = 168/211 (79.62%), Postives = 183/211 (86.73%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+H+Q GQCGNQIGSKFWEV+ DEHGIDPTG Y G SDLQL+R+NVYYNEAS G++VPRAVL+DLEPGTMDSVR+GP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAEL+D+VLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDIC
Sbjct:    1 MREIVHLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB5_ECTVR (Tubulin beta-5 chain OS=Ectocarpus variabilis GN=TUBB5 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.631e-97
Identity = 166/211 (78.67%), Postives = 183/211 (86.73%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+HVQ GQCGNQIGSKFWEV+ DEHGIDPTG Y G SDLQLER+N Y+NEA+ GR+VPRA+LMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE+CD LQGFQ+ H              ISK+REEYPDR+M T+SV PSPKVSDTVVEPYNATLSVHQLVENAD+C  LDNEALYDIC
Sbjct:    1 MREIVHVQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLERINCYFNEATGGRYVPRAILMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDALQGFQLTHSMGGGTGAGMGTLLISKVREEYPDRVMSTYSVIPSPKVSDTVVEPYNATLSVHQLVENADQCFTLDNEALYDIC 211          
BLAST of FC921635 vs. ExPASy Swiss-Prot
Match: TBB_BABBO (Tubulin beta chain OS=Babesia bovis PE=3 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 6.048e-97
Identity = 167/211 (79.15%), Postives = 184/211 (87.20%), Query Frame = 3
Query:   78 MREILHVQGGQCGNQIGSKFWEVVCDEHGIDPTGRYIGTSDLQLERVNVYYNEASCGRFVPRAVLMDLEPGTMDSVRTGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDAVLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDIC 710
            MREI+H+Q GQCGNQIG+KFWEV+ DEHGID +G Y G SDLQLER++V+YNEA+ GR+VPRAVLMDLEPGTMDSVR GP+GQ+FRPDNFVFGQ+GAGNNWAKGHYTEGAELID+VLDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSVFPSPKVSDTVVEPYNATLSVHQLVENADE  V+DNEALYDIC
Sbjct:    1 MREIVHIQAGQCGNQIGAKFWEVISDEHGIDQSGTYHGDSDLQLERIDVFYNEATGGRYVPRAVLMDLEPGTMDSVRAGPFGQLFRPDNFVFGQTGAGNNWAKGHYTEGAELIDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGSGMGTLLISKIREEYPDRIMETFSVFPSPKVSDTVVEPYNATLSVHQLVENADEVQVIDNEALYDIC 211          
The following BLAST results are available for this feature:
BLAST of FC921635 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 422
Match NameE-valueIdentityDescription
TBB_EIMTE2.456e-9880.57Tubulin beta chain OS=Eimeria tenella PE=2 SV=1[more]
TBB6_ECTVR4.188e-9879.15Tubulin beta-6 chain OS=Ectocarpus variabilis GN=T... [more]
TBB_PLAFA5.470e-9879.62Tubulin beta chain OS=Plasmodium falciparum PE=3 S... [more]
TBB1_PHYPO7.144e-9880.48Tubulin beta-1 chain OS=Physarum polycephalum GN=B... [more]
TBB_ACHKL1.219e-9779.62Tubulin beta chain OS=Achlya klebsiana PE=2 SV=1[more]
TBB_TRYCR2.715e-9778.20Tubulin beta chain OS=Trypanosoma cruzi PE=3 SV=2[more]
TBB2_ECHMU3.546e-9778.20Tubulin beta-2 chain OS=Echinococcus multiloculari... [more]
TBB1_NOTCO3.546e-9779.62Tubulin beta-1 chain OS=Notothenia coriiceps negle... [more]
TBB5_ECTVR4.631e-9778.67Tubulin beta-5 chain OS=Ectocarpus variabilis GN=T... [more]
TBB_BABBO6.048e-9779.15Tubulin beta chain OS=Babesia bovis PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32107F01EF RVDevelopN Citrus clementina cDNA clone C32107F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921635 ID=FC921635; Name=FC921635; organism=Citrus clementina; type=EST; length=710bp
GAACACTCTCATTTGAATTTTATCTCACTCTCATTTTTTCTCTCTCTAGC
GAAAATCTTCAGTAAGTCTCAGGAAAAATGAGGGAGATCCTTCATGTTCA
GGGTGGACAATGTGGTAACCAGATTGGTTCCAAGTTCTGGGAGGTTGTCT
GTGATGAACATGGCATCGACCCAACCGGAAGATACATTGGCACCTCAGAT
CTGCAGTTGGAGCGTGTCAATGTCTACTACAATGAGGCCTCCTGTGGGCG
GTTTGTTCCTCGTGCAGTTCTCATGGATTTGGAGCCTGGCACCATGGACA
GTGTTAGAACTGGTCCATACGGCCAGATTTTCAGGCCTGATAACTTTGTG
TTTGGACAGTCTGGTGCTGGAAACAATTGGGCCAAGGGTCACTACACTGA
GGGTGCTGAGCTTATTGATGCTGTTCTTGATGTTGTGAGAAAAGAGGCTG
AGAACTGTGACTGTCTTCAAGGTTTCCAAGTCTGCCACTCTTTGGGTGGA
GGAACTGGTTCTGGAATGGGTACCTTGTTGATCTCAAAAATTAGGGAGGA
GTATCCTGACAGGATGATGCTCACATTCTCAGTGTTCCCTTCTCCAAAGG
TCTCCGATACAGTTGTTGAGCCCTACAATGCAACCCTCTCTGTTCACCAG
CTTGTTGAGAATGCAGATGAGTGCATGGTCCTTGATAATGAGGCTTTGTA
TGACATCTGC
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