FC921636

Overview
NameFC921636
Unique NameFC921636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC921636_ssr45 microsatellite FC921636_ssr45:45..60. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11344 contig Ccv1_Contig11344:129..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B1_ARATH (F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP2B1 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 51/150 (34.00%), Postives = 83/150 (55.33%), Query Frame = 1
Query:  256 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIF-ALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            +PE C++ V  + +P + C +A ++++ + AA SD VWE  LPS Y  L+     +   +LSKK+IF +L    V  ++G K  W+++ +G+ C  +S   + I   +   YW WI   ES+F  VA L+ + WFEV G +   +L   T
Sbjct:   35 LPEDCISKVISHTSPRDACVVASVSKSVKSAAQSDLVWEMFLPSEYSSLV----LQSANHLSKKEIFLSLADNSVLVENGKKSFWVEKASGKKCYMLSAMELTIIWGDSPAYWKWITVPESKFEKVAELRNVCWFEVRGKISCGMLSKGT 180          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 48/153 (31.37%), Postives = 87/153 (56.86%), Query Frame = 1
Query:  247 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIED-RRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            L  +PE C++ +  + +P + C  A +++ F  A  SD VWE  LP++Y+ L+    P R  +  K+  F+L + P+  +DG   +WL++ +G+ C+ +S  AM ++ + D  + + WIP  ESRF  VA L++ + FE +  +   +L + T
Sbjct:   24 LDSLPEGCISNIISFTSPEDACVAAAVSKIFESAVKSDIVWEKFLPTDYESLI---TPSRVFSSKKELYFSLCNDPLLIEDGKMSLWLEKASGKRCIMLSATAMNLSSMADMSQRFLWIPCPESRFETVAALREAYRFEFNCRMNTRVLSLRT 173          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=4 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.004e-19
Identity = 44/151 (29.14%), Postives = 80/151 (52.98%), Query Frame = 1
Query:  253 DIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFA-LLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            D+PE C+A +  + +P + C ++ +++  R AA S++ WE  LPS+Y+  +D          S K +F      P+  +DG    W+++ +G+ C  +S + + I  ++   +W W+   +SRF  VA L  + WFE+ G +   LL  +T
Sbjct:    5 DLPEECIATMISFTSPFDACRISAVSKLLRSAADSNTTWERFLPSDYRMYID----NSLSRFSNKQLFLRFCESPLLIEDGRTSFWMEKRSGKKCWMLSARKLDIVWVDSPEFWIWVSIPDSRFEEVAGLLMVCWFEIRGKISTSLLSKAT 151          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 44/149 (29.53%), Postives = 81/149 (54.36%), Query Frame = 1
Query:  256 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            +PE+CVA +  + TP +  + A ++  FR A  SD VWE  LP++Y  ++        +  SKK+++  L   +  D+G K   +++++G++   +S++ ++IT  + R YW+W P  +SRF     L    W E+ G ++   L  +T
Sbjct:    2 LPEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDYCHVISRSTDPHRIFSSKKELYRCLCESILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSWSPRSDSRFSEGVQLIMTDWLEIIGKIQTGALSPNT 150          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.229e-18
Identity = 46/148 (31.08%), Postives = 79/148 (53.38%), Query Frame = 1
Query:  247 LGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLL 690
            + ++PE C+A +    TP ++C L+ ++  FR AA SD VW + LP+++        P   L   K+  F+L+  P+  +       L+R +G  C  ++ +A+ I    ++RYW+WI    +RF  VA L  +WW E+ G + + LL
Sbjct:    1 MNNLPEDCIAKILSLTTPLDVCRLSAVSSIFRSAAGSDDVWNHFLPADFP--AGFAAPAG-LPTRKQLFFSLVDNPLLINGTLLSFSLERKSGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITGKINITLL 145          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.662e-17
Identity = 53/161 (32.92%), Postives = 85/161 (52.80%), Query Frame = 1
Query:  223 NGESMGPGLGDIPESCVACVFMYLTPPEICNLARL-NRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            NG S      D+P+ C+A +  + + P    LA L +++F    +SDSVWE  LP    D + L+P  R  + SKK+++  L  P P  +G     LD+ +G+ C+ +S K + I+ + + +YW WI   ESRF  V  L  I  F++ GV+   ++   T
Sbjct:   28 NGSSAS--FDDLPDDCLAIISSFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPP--PDYVSLLPKSRVFS-SKKELYFALCDPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPESRFDEVPELLNIDSFDIRGVLNTRIISPGT 183          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.155e-16
Identity = 45/163 (27.61%), Postives = 78/163 (47.85%), Query Frame = 1
Query:  178 KLKIEMGASLSSLTDNGESMGPGLGDIPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRF-HVVAYLQQIWWFEV 663
            ++K  +  S S     G +    LGD+PE C++ +  + +P + C  A +++ F  A  SD VWE  +P  Y+ LL      ++ +  K+  FAL    V  +   K++W+++ TG+ C+ +S  A+    +     W WI    S +   V  L    WFE+
Sbjct:   17 RVKKTLRLSASDQQSQGVTEPLSLGDLPEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEYESLLS---RSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASAL---NLSTHHTWKWITNPVSAWLETVPELLTTRWFEI 173          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: PP2B3_ARATH (F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP2B3 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.500e-15
Identity = 40/112 (35.71%), Postives = 66/112 (58.93%), Query Frame = 1
Query:  256 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDI-FALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRY 588
            +PE+C++ +  + TP + C  A +++AF  A  SDSVWE  LP +Y  L+    PE  + LSKK++ F+L   P+  + G K  WLD+ +G  C+ +S K M I+ +   ++
Sbjct:   16 LPENCISNIISFTTPRDACFAASVSKAFESAVQSDSVWEKFLPLDYSSLV----PESRVFLSKKELCFSLCRVPLLIEGGKKSFWLDKTSGEKCIMLSPKGMVISWVNSPQF 123          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 41/149 (27.52%), Postives = 79/149 (53.02%), Query Frame = 1
Query:  256 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            +PE+C+A +  + +P +  + + ++  FR A  SD VWE  LPS+Y+ L+       +   SKK+I+  L   +  D+  K   +++ +G++   +S + ++IT  +   YW+W    +SRF   A L      E++G ++  +L  +T
Sbjct:    4 LPEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDYKSLISQSTDHHWNISSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSDSRFSESAELIITDRLEIEGKIQTRVLSANT 152          
BLAST of FC921636 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 41/149 (27.52%), Postives = 77/149 (51.68%), Query Frame = 1
Query:  256 IPESCVACVFMYLTPPEICNLARLNRAFRGAASSDSVWENKLPSNYQDLLDLMPPERYLNLSKKDIFALLSRPVPFDDGNKEVWLDRVTGRVCLSISTKAMAITGIEDRRYWNWIPTEESRFHVVAYLQQIWWFEVDGVVKVPLLLMST 702
            +PE+CVA +  + +P +  + + ++  FR A  SD VWE  LPS+Y+ L+        +  SKK+I+  L   +  D+  K   +++ +G++   +S + ++IT  +   Y +W    +SRF   A L      E+ G ++  +L  +T
Sbjct:    4 LPEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHYKSLISQSTDHHRIFSSKKEIYRCLCDSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSDSRFSESAELITTDRLEIKGKIQTTVLSPNT 152          
The following BLAST results are available for this feature:
BLAST of FC921636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PP2B1_ARATH1.186e-2034.00F-box protein PP2-B1 OS=Arabidopsis thaliana GN=PP... [more]
SKIP3_ARATH7.685e-2031.37F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKI... [more]
P2B12_ARATH1.004e-1929.14Putative F-box protein PP2-B12 OS=Arabidopsis thal... [more]
P2B15_ARATH1.449e-1829.53F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]
P2B11_ARATH3.229e-1831.08F-box protein PP2-B11 OS=Arabidopsis thaliana GN=P... [more]
PP2B5_ARATH4.662e-1732.92F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
PP2B7_ARATH5.155e-1627.61F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
PP2B3_ARATH1.500e-1535.71F-box protein PP2-B3 OS=Arabidopsis thaliana GN=PP... [more]
P2B14_ARATH1.270e-1427.52F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]
P2B13_ARATH4.085e-1327.52F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionC32107F02EF RVDevelopN Citrus clementina cDNA clone C32107F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921636 ID=FC921636; Name=FC921636; organism=Citrus clementina; type=EST; length=703bp
GGTCGCACACAGCACGCTCTTGACTTTCTCCCTAACCAAACATCCTCTCT
CTCTCTCTCTCGCTTTATCCTTCAGTCTCTTCTACACCATGACGACGAGT
TAGGTATAAGCAACAGCACAAACACGCAAAGCGAAGAAGAAGGGAAAAAA
AGGCTTTGGTAAATTCAGTACAGTAATAAATTAAAAATAGAAATGGGGGC
GTCGCTATCGAGCCTGACCGACAACGGAGAGAGCATGGGGCCGGGACTGG
GAGACATACCGGAGAGCTGCGTGGCGTGCGTGTTCATGTACTTGACGCCG
CCGGAGATTTGCAATCTCGCCAGATTAAACCGCGCTTTCCGCGGAGCGGC
GTCGTCTGATTCCGTGTGGGAAAACAAGCTCCCTTCTAACTATCAAGATC
TGCTCGATTTGATGCCTCCTGAACGCTACCTTAACTTGTCCAAAAAAGAC
ATTTTTGCCCTCCTCTCCCGCCCCGTTCCCTTCGATGATGGCAATAAGGA
AGTGTGGTTAGATAGAGTGACGGGAAGAGTTTGCTTGTCAATATCAACAA
AGGCTATGGCAATCACCGGAATTGAAGATCGCAGATATTGGAATTGGATT
CCCACTGAAGAATCAAGATTCCATGTGGTGGCCTATTTGCAACAAATATG
GTGGTTCGAGGTGGATGGGGTAGTGAAAGTTCCACTCCTGCTGATGTCTA
CAC
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