FC921637

Overview
NameFC921637
Unique NameFC921637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921637 vs. ExPASy Swiss-Prot
Match: TPC1_YARLI (Mitochondrial thiamine pyrophosphate carrier 1 OS=Yarrowia lipolytica GN=TPC1 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.070e-11
Identity = 41/155 (26.45%), Postives = 67/155 (43.23%), Query Frame = 2
Query:  116 SEPYKGIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFV--YSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK 574
            S  Y+GI    ++ ++DEG+ ALW+GN    + Y    A  F    +  ++ N   +    WK  +G               +  Y  D  RT  A  A+ AK    + +  L   ++   K++G  G +RG + S + I  Y GL+F  Y  +K
Sbjct:   48 SRYYRGIFQTMQQIVRDEGVTALWKGNIPAELLYVFYGATQFVTYHHVNQVINAYNETAEKWKISSGAQSFIAGATAGAGATIATYPFDLFRTLFA--AQGAKNCNVKNYTSLFQTFKLIYKTEGPLGFFRGVSSSIISIAPYMGLFFASYGRVK 200          

HSP 2 Score: 25.7942 bits (55), Expect = 1.070e-11
Identity = 12/32 (37.50%), Postives = 20/32 (62.50%), Query Frame = 3
Query:    9 LMGGVSAAVSKTAAAPIERVKLLIQTKMR*SR 104
            L GG++  VS+   AP++ VK+ +Q +   SR
Sbjct:   18 LCGGIAGMVSRFCIAPLDVVKIRLQLQKDGSR 49          
BLAST of FC921637 vs. ExPASy Swiss-Prot
Match: SCMC3_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Mus musculus GN=Slc25a23 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.784e-11
Identity = 35/142 (24.65%), Postives = 70/142 (49.30%), Query Frame = 2
Query:  149 KRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK 574
            +  +++ G+++LWRGN  NV++  P  A+ F   +  KR    +++     + F                 +Y ++  +TRL       ++ G  Q+ GL+D  ++ ++ +G    YRG+  + +GII Y G+   +Y++LK
Sbjct:  229 RNMIQEGGVLSLWRGNGINVLKIAPESAIKFMAYEQIKRAIRGQQETLHVQERFVAGSLAGATAQT----IIYPMEVLKTRLT-----LRRTG--QYKGLLDCAKRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLK 359          

HSP 2 Score: 30.0314 bits (66), Expect = 1.784e-11
Identity = 14/42 (33.33%), Postives = 24/42 (57.14%), Query Frame = 3
Query:   15 GGVSAAVSKTAAAPIERVKLLIQTKMR*SRVVGYLNPTRALV 140
            G V+ AVS+T  AP++R+K+ +Q     S  +  L   R ++
Sbjct:  191 GAVAGAVSRTGTAPLDRLKVFMQVHASKSNRLNILGGLRNMI 232          
BLAST of FC921637 vs. ExPASy Swiss-Prot
Match: SCMC3_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-3 OS=Homo sapiens GN=SLC25A23 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 3.903e-11
Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 2
Query:  170 GIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK 574
            GI +LWRGN  NV++  P  A+ F   +  KR    +++     + F                 +Y ++  +TRL       ++ G  Q+ GL+D  R+ ++ +G    YRG+  + +GII Y G+   +Y++LK
Sbjct:  237 GIRSLWRGNGINVLKIAPESAIKFMAYEQIKRAILGQQETLHVQERFVAGSLAGATAQT----IIYPMEVLKTRLT-----LRRTG--QYKGLLDCARRILEREGPRAFYRGYLPNVLGIIPYAGIDLAVYETLK 360          

HSP 2 Score: 31.187 bits (69), Expect = 3.903e-11
Identity = 14/43 (32.56%), Postives = 26/43 (60.47%), Query Frame = 3
Query:   15 GGVSAAVSKTAAAPIERVKLLIQTKMR*SRVVGYLNPTRALVI 143
            G V+ AVS+T  AP++R+K+ +Q     +  +  L   R++V+
Sbjct:  192 GAVAGAVSRTGTAPLDRLKVFMQVHASKTNRLNILGGLRSMVL 234          
BLAST of FC921637 vs. ExPASy Swiss-Prot
Match: TAAC_ARATH (Thylakoid ADP,ATP carrier protein, chloroplastic OS=Arabidopsis thaliana GN=TAAC PE=1 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.918e-11
Identity = 51/183 (27.87%), Postives = 76/183 (41.53%), Query Frame = 2
Query:  161 KDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKKDRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK---PVVLTGKLQDSFFC*LRPWVAHH*WCWSCFLPIDTVRRRMMM 700
            K+EGI   W+GN   VIR  P  A+     + +K+LF   + +DG      G                Y LD  R RLA          E  +  +  V    ++ +G+A  Y G   S + I  Y  + F ++D +K   P     K Q S    L   VA      +C+ P+DT+RR+M +
Sbjct:  170 KEEGIKGYWKGNLPQVIRIVPYSAVQLFAYETYKKLF---RGKDGQLS-VLGRLGAGACAGMTSTLITYPLDVLRLRLA---------VEPGYRTMSQVALNMLREEGVASFYNGLGPSLLSIAPYIAINFCVFDLVKKSLPEKYQQKTQSSL---LTAVVAAAIATGTCY-PLDTIRRQMQL 335          

HSP 2 Score: 31.187 bits (69), Expect = 3.918e-11
Identity = 12/27 (44.44%), Postives = 19/27 (70.37%), Query Frame = 3
Query:    6 FLMGGVSAAVSKTAAAPIERVKLLIQT 86
            F  G  + A +K+  AP++R+KLL+QT
Sbjct:  119 FFAGAFAGAAAKSVTAPLDRIKLLMQT 145          
BLAST of FC921637 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.047e-11
Identity = 41/151 (27.15%), Postives = 68/151 (45.03%), Query Frame = 2
Query:  131 GIGDCFKRTMKDEGIVALWRGNTANVIRYFPTQALNFAFKDYFKRLFNFKK---DRDGYWKWFAGNXXXXXXXXXXXXXFVYSLDYARTRLANDAKAAKKGGERQFNGLVDVYRKTMKSDGIAGLYRGFNISCVGIIVYRGLYFGMYDSLK 574
            G+  C      + G+ + WRGN  NVI+  P  A+ F   D  KR     K   +   Y + FAG+              +Y ++  +TRL     A ++ G+    G++    K    +GI   Y+G+  + +GII Y G+   +Y++LK
Sbjct:  284 GVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKRWIQEYKGGAELTTYERLFAGSSAGAISQTA-----IYPMEVMKTRL-----ALRRTGQLD-RGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPYAGIDLTVYETLK 423          

HSP 2 Score: 30.4166 bits (67), Expect = 5.047e-11
Identity = 12/36 (33.33%), Postives = 23/36 (63.89%), Query Frame = 3
Query:   15 GGVSAAVSKTAAAPIERVKLLIQTKMR*SRVVGYLN 122
            GGV+ A+S+T  AP +R+K+ +Q     +  +G ++
Sbjct:  252 GGVAGAMSRTCTAPFDRIKVYLQVNSTKTNKLGVVS 287          
The following BLAST results are available for this feature:
BLAST of FC921637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
TPC1_YARLI1.070e-1126.45Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
SCMC3_MOUSE1.784e-1124.65Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC3_HUMAN3.903e-1127.41Calcium-binding mitochondrial carrier protein SCaM... [more]
TAAC_ARATH3.918e-1127.87Thylakoid ADP,ATP carrier protein, chloroplastic O... [more]
CMC3_CAEBR5.047e-1127.15Probable calcium-binding mitochondrial carrier CBG... [more]

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Properties
Property NameValue
Genbank descriptionC32107F03EF RVDevelopN Citrus clementina cDNA clone C32107F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921637 ID=FC921637; Name=FC921637; organism=Citrus clementina; type=EST; length=711bp
TCGATTTCCTTATGGGTGGAGTTTCTGCTGCTGTGTCCAAAACAGCTGCT
GCTCCCATTGAGCGTGTTAAGCTTTTGATTCAAACCAAGATGAGATGATC
AAGAGTGGTAGGCTATCTGAACCCTACAAGGGCATTGGTGATTGTTTTAA
GCGTACAATGAAGGATGAGGGTATTGTTGCTTTGTGGAGAGGAAATACTG
CTAATGTTATCCGTTACTTCCCCACTCAGGCCCTGAACTTTGCATTCAAG
GATTACTTCAAGAGGCTCTTCAACTTCAAGAAAGACAGGGATGGTTACTG
GAAATGGTTTGCTGGTAATTTGGGATCAGGAGGTGCTGCTGGTGCTTCAT
CCCTTCTCTTTGTTTACTCTTTGGACTATGCTCGTACCCGTCTGGCCAAT
GATGCCAAAGCTGCGAAGAAGGGAGGAGAGAGGCAATTCAATGGGCTGGT
TGATGTCTACAGAAAGACAATGAAATCTGATGGCATTGCTGGGCTTTACC
GTGGTTTCAACATTTCATGTGTTGGAATCATTGTGTACCGTGGTCTTTAC
TTTGGCATGTATGATTCTCTGAAGCCAGTGGTCTTGACTGGAAAGTTGCA
GGATAGTTTCTTTTGCTAGCTTCGCCCTTGGGTGGCTCATCACTAATGGT
GCTGGTCTTGCTTCCTACCCATTGACACTGTCCGTAGAAGGATGATGATG
ACATCTGGTGA
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