FC921640

Overview
NameFC921640
Unique NameFC921640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14234 contig Ccv1_Contig14234:7..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 2
Query:   44 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G V T CC+GV +L N AR+T DRQ  C CL  A + +      +  AAGLP  CG+NIPY+IS +T+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANAL--PTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.208e-20
Identity = 52/113 (46.02%), Postives = 70/113 (61.95%), Query Frame = 2
Query:   62 LVLVCLMGSAFVS----TKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            LVLV L+ +  ++    T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_GERHY (Non-specific lipid-transfer protein OS=Gerbera hybrida PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 2
Query:   17 MASSVMLMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            MAS VM +  V      + C++ SA  S    ++C  V + L PC  Y++ GG V   CCNGVR L NAA++T DRQT C CLK  ++  + TR  L  A  LPGKCG++I Y+I+P+ DCS++
Sbjct:    1 MASMVMNVLCVA-----VACMVFSA--SYADAISCGQVTSGLVPCFGYLAAGGPVPPACCNGVRGLNNAAKTTPDRQTACGCLKGILA--ANTRINLNNANSLPGKCGISIGYKITPNIDCSKI 115          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.578e-20
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            ++C  V + L+PC+ Y+   G + + CC GV+ L  AA+S +DR+T CTCLK A + I      +G AAGLPG CG+NIPY+ISPSTDCS+VQ
Sbjct:   25 LSCGQVQSGLAPCLPYLQGRGPLGS-CCGGVKGLLGAAKSLSDRKTACTCLKSAANAIK--GIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTPB_BRAOT (Non-specific lipid-transfer protein B OS=Brassica oleracea var. italica GN=WAX9B PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 50/116 (43.10%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   44 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  S+       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.691e-20
Identity = 49/96 (51.04%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            +TC  V + L+PCI YV  GGAV   CCNG+R + N AR+T DRQ  C CLKQ   +V G++        AA LPGKCG++IPY+IS ST+C+ V+
Sbjct:    1 ITCGQVSSALAPCIPYVRGGGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNN-----AAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.515e-20
Identity = 51/119 (42.86%), Postives = 72/119 (60.50%), Query Frame = 2
Query:   35 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            LMKL     LVL C++ +  +++ A ++C TV   ++PCI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  S+       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LMKLAC---LVLACMIVAGPITSNAALSCGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--SFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = 2
Query:   98 STKAQVTCRTVVNDLSPCISYV--SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            + +A +TC  V   L+PC+ Y+       V   CCN VR L NAAR+T D++T C CLKQ  + +  T   L  AAGLP +CG+NIPY+ISP+TDC+RV
Sbjct:   23 NAEAVLTCGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAV--TGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   35 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            + +L     +V   ++  A  +++A ++C  V + ++ C+SY    G A +  CC+GVR+L +AAR+TADR+  C CLK A  GIS      G AA +P KCG+++PY IS STDCSRV
Sbjct:    1 MARLAVAIAVVAAVVVVLAATTSEAAISCGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIS--GLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_BRANA (Non-specific lipid-transfer protein 1 OS=Brassica napus GN=LTP1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.995e-20
Identity = 49/116 (42.24%), Postives = 70/116 (60.34%), Query Frame = 2
Query:   44 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G +   CC GV  L N AR+T DRQ  C CL  A +  ++       AAGLP  CG+NIPY+IS ST+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAAN--AFPTLNAARAAGLPKACGVNIPYKISKSTNCNSVR 117          
The following BLAST results are available for this feature:
BLAST of FC921640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP3_BRANA1.208e-2043.10Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLT2B_ORYSJ1.208e-2046.02Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP_GERHY1.578e-2044.35Non-specific lipid-transfer protein OS=Gerbera hyb... [more]
NLTP2_TOBAC1.578e-2051.61Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTPB_BRAOT2.691e-2043.10Non-specific lipid-transfer protein B OS=Brassica ... [more]
NLTP1_PRUPE2.691e-2051.04Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP2_BRANA3.515e-2042.86Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTP_DAUCA5.995e-2048.48Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_SORBI5.995e-2042.02Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_BRANA5.995e-2042.24Non-specific lipid-transfer protein 1 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionC32107F06EF RVDevelopN Citrus clementina cDNA clone C32107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921640 ID=FC921640; Name=FC921640; organism=Citrus clementina; type=EST; length=620bp
AAGCTAGGGTATCATAATGGCTAGCTCCGTAATGCTGATGAAACTTGTGA
CAGGCTGCATCTTGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCC
ACCAAAGCACAAGTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATG
CATATCCTACGTGTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACG
GAGTGAGGACACTCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACC
GTGTGTACGTGCTTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTA
CCAGCTCGGACTCGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATCC
CTTACCAGATCAGCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGA
TGAACTAGTAGCCATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCAT
GGGGTGAGAGAATAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGT
TAAATAGAAGTTGTTAGCGTCATCTGGTGGGATTTATGTTGTCTCATGTT
TTGTTAGGTTCTGTCCCAACCATAAGTACTAAAGAATAAGATTTTGTAAG
TTACGTTTATGGAGTGACAT
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