FC921640

Overview
NameFC921640
Unique NameFC921640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14234 contig Ccv1_Contig14234:7..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.929e-18
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 2
Query:   35 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGG-AVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            LMKL     L+  C++ +  +++ A ++C TV   ++PCI Y++    AV T CC+GV +L N AR+T DRQ  C CL  A + +      +  AAGLP  CG+NIPY+IS +T+C+ V+
Sbjct:    4 LMKLAC---LIFACMIVAGPITSNAALSCGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANAL--PTINVARAAGLPKACGVNIPYKISKTTNCNSVK 118          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP6_GOSHI (Non-specific lipid-transfer protein 6 OS=Gossypium hirsutum GN=LTP6 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 52/120 (43.33%), Postives = 72/120 (60.00%), Query Frame = 2
Query:   38 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGA--VTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            M L   C++VL CL+  A ++  A ++   V + L PC+ YV    A     N C G+R+L +AAR   DRQ  C C+K   + IS   Y  G+AAGLPG+C ++IPY+ISPS DC RV+
Sbjct:    5 MSLKLACVVVL-CLLVDAPLAQGA-ISYDQVKSSLLPCVGYVRGNNARPAPPNYCKGIRSLKSAARIRLDRQAACKCIKSLAADISDINY--GVAAGLPGQCNVHIPYKISPSIDCKRVK 120          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.290e-18
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQ---AVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            +TC  V  +L+ CI ++  GG V  +CC GV+ + N++R+TADR+ VC+CLK    AV GI+        A  LPGKCG+NIPY+IS ST+C+ +
Sbjct:    1 MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNN-----AEALPGKCGVNIPYKISTSTNCNSI 90          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.297e-18
Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 2
Query:   35 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            L+KL T   LV+VC++ +A ++++A ++C  V   L  C +Y++ GG +   CC+GV+ L + AR+T DRQ  C C++ A   +  +R   G AA LPG C + I Y IS  T+C+ V+
Sbjct:    4 LLKLST---LVIVCMLVTAPMASEAAISCGAVTGSLGQCYNYLTRGGFIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALG-SRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP8_HORVU (Non-specific lipid-transfer protein Cw18 OS=Hordeum vulgare GN=CW18 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.611e-18
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = 2
Query:   62 LVLVCLMGSAF-VSTKAQVTCRTVVNDLSPCISYVSYGG-AVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            L LV L+ +   V+  A +TC  V + L PC +Y    G + +  CC+GV+ L   ARSTAD+Q  C CLK          Y  G AAG+P +CG+++PY IS S DCS++
Sbjct:    9 LALVALVAAMLLVAADAAITCGQVSSALGPCAAYAKGSGTSPSAGCCSGVKRLAGLARSTADKQATCRCLKSVAGA-----YNAGRAAGIPSRCGVSVPYTISASVDCSKI 114          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTPC_ARATH (Non-specific lipid-transfer protein 12 OS=Arabidopsis thaliana GN=LTP12 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.785e-17
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = 2
Query:   41 KLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            K++T C++VL   M S    T++ + C TV + L+ C++Y++  G + + CC GV++LY  A++T DR+ VC CLK  ++G         L A LP  CG++IPY IS ST+C  +
Sbjct:    6 KIIT-CLIVLTIYMASP---TESTIQCGTVTSTLAQCLTYLTNSGPLPSQCCVGVKSLYQLAQTTPDRKQVCECLK--LAGKEIKGLNTDLVAALPTTCGVSIPYPISFSTNCDSI 115          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_WHEAT (Non-specific lipid-transfer protein (Fragment) OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.805e-16
Identity = 45/108 (41.67%), Postives = 61/108 (56.48%), Query Frame = 2
Query:   65 VLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            V + LM +A       + C  V + + PC+SYV  G   +  CC+GV+ L+N ARS +DRQ+ C CLK    GI         A  +P KCG+N+PY IS + DCSRV
Sbjct:    8 VALVLMLAAVPRAAVAIDCGHVDSLVRPCLSYVQGGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNEDNARSIPPKCGVNLPYTISLNIDCSRV 113          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_HELAN (Non-specific lipid-transfer protein AP10 OS=Helianthus annuus PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.528e-15
Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = 2
Query:   53 GCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            G  ++ + +M    V     +TC  V  +L+PC+ Y+  GG  T  CC G + L  A R+ ADR+T C C K A   +   + +  +A+ LPGKCG++    I+P+ +C+ +
Sbjct:    7 GVAILAMIVMAQLMVHPSVAITCNDVTGNLTPCLPYLRSGGKPTPACCAGAKKLLGATRTQADRRTACKCAKTAAPQL---KVRPDMASSLPGKCGISTSIPINPNVNCNTI 115          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.446e-15
Identity = 42/94 (44.68%), Postives = 60/94 (63.83%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAV-TTNCCNGVRTLYNAARSTADRQTVCTC-LKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            ++C  V + + PC++Y    GA  + +C +GVR+L  AAR+TADR+  C C LK A S +S      G A+ +PG+CG+ +PY IS S DCSRV
Sbjct:    2 ISCGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVS--GLNAGKASSIPGRCGVRLPYAISASIDCSRV 93          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.764e-14
Identity = 46/120 (38.33%), Postives = 67/120 (55.83%), Query Frame = 2
Query:   35 LMKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTN--CCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPY--QISPSTDCS 382
            LMKL  GC LV V ++ +  ++ KA ++C  V ++L PC  Y++ GG  +    CCNGVR L     +T DR+  C C+K A   +         AAG+P +CG+ IPY  QI  +T C+
Sbjct:    4 LMKL--GC-LVFVFVIAAGPITAKAALSCGEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVG-PGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
The following BLAST results are available for this feature:
BLAST of FC921640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTPD_BRAOT1.929e-1840.83Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP6_GOSHI3.290e-1843.33Non-specific lipid-transfer protein 6 OS=Gossypium... [more]
NLTP1_PHAAU3.290e-1846.32Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP5_ARATH4.297e-1838.66Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP8_HORVU5.611e-1841.44Non-specific lipid-transfer protein Cw18 OS=Hordeu... [more]
NLTPC_ARATH2.785e-1738.79Non-specific lipid-transfer protein 12 OS=Arabidop... [more]
NLTP1_WHEAT1.805e-1641.67Non-specific lipid-transfer protein (Fragment) OS=... [more]
NLTP1_HELAN1.528e-1533.04Non-specific lipid-transfer protein AP10 OS=Helian... [more]
NLTP_ELECO4.446e-1544.68Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP7_ARATH3.764e-1438.33Non-specific lipid-transfer protein 7 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC32107F06EF RVDevelopN Citrus clementina cDNA clone C32107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921640 ID=FC921640; Name=FC921640; organism=Citrus clementina; type=EST; length=620bp
AAGCTAGGGTATCATAATGGCTAGCTCCGTAATGCTGATGAAACTTGTGA
CAGGCTGCATCTTGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCC
ACCAAAGCACAAGTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATG
CATATCCTACGTGTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACG
GAGTGAGGACACTCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACC
GTGTGTACGTGCTTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTA
CCAGCTCGGACTCGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATCC
CTTACCAGATCAGCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGA
TGAACTAGTAGCCATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCAT
GGGGTGAGAGAATAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGT
TAAATAGAAGTTGTTAGCGTCATCTGGTGGGATTTATGTTGTCTCATGTT
TTGTTAGGTTCTGTCCCAACCATAAGTACTAAAGAATAAGATTTTGTAAG
TTACGTTTATGGAGTGACAT
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