FC921640

Overview
NameFC921640
Unique NameFC921640
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14234 contig Ccv1_Contig14234:7..626. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_AMACA (Non-specific lipid-transfer protein OS=Amaranthus caudatus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            VTC  V   L PC++Y+   GA     NCC GVR+L  AA++ ADR+  C C+K A        Y+  +AA L  +CG+ + Y +SP+ +C+ VQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP1_AMAHP (Non-specific lipid-transfer protein 1 OS=Amaranthus hypochondriacus PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.420e-14
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = 2
Query:  113 VTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 391
            VTC  V   L PC++Y+   GA     NCC GVR+L  AA++ ADR+  C C+K A        Y+  +AA L  +CG+ + Y +SP+ +C+ VQ
Sbjct:    2 VTCTVVTKALGPCMTYLKGTGATPPPANCCAGVRSLKAAAQTVADRRMACNCMKSAAQKTKSLNYK--VAARLASQCGVRMSYSVSPNVNCNSVQ 94          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.440e-13
Identity = 35/112 (31.25%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   62 LVLVCLMGSAFVS--TKAQVTCRTVVNDLSPCISYVSYG-GAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            L ++ ++G  F+   +++ ++C  V+ DL PC+SY++ G G     CC+GV++L  A  ++AD++  C C+K   + ++    +  LA  L   CG ++P   SP+ DC+ V
Sbjct:    7 LAIISVLGIFFIPRYSESAISCSVVLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT---VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 44/119 (36.97%), Postives = 66/119 (55.46%), Query Frame = 2
Query:   47 VTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVT--TNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKC---GLNIPYQISPSTDCSRV 388
            V G ++ ++ + G+  V  +  ++C  VV+ ++PC +Y+  G A T    CC  +R L +  ++T DRQ VC CLK           +LG AA LPG C    LN+P  ISP+ DCS+V
Sbjct:   12 VVGLVVTMMNVWGA--VPVEGAISCNQVVSAMTPCATYL-IGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSYG---VKLGKAANLPGLCKVTDLNVP--ISPNVDCSKV 122          
BLAST of FC921640 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 39/110 (35.45%), Postives = 55/110 (50.00%), Query Frame = 2
Query:   59 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 388
            +LV+  L+G A+      + C  V   L+ C+ Y+  GG  +  CCNG+ +L  AA   ADRQ  C CLK   + I         A  LP KCG+NI    S + DC+ +
Sbjct:   13 LLVITILLGIAYHGEA--IACPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDD--FAKQLPAKCGVNIGVPFSKTVDCNSI 118          
The following BLAST results are available for this feature:
BLAST of FC921640 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP_AMACA6.420e-1440.00Non-specific lipid-transfer protein OS=Amaranthus ... [more]
NLTP1_AMAHP6.420e-1440.00Non-specific lipid-transfer protein 1 OS=Amaranthu... [more]
NLTP8_ARATH2.440e-1331.25Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP_PINTA1.211e-1236.97Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_ARATH1.748e-1135.45Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC32107F06EF RVDevelopN Citrus clementina cDNA clone C32107F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921640 ID=FC921640; Name=FC921640; organism=Citrus clementina; type=EST; length=620bp
AAGCTAGGGTATCATAATGGCTAGCTCCGTAATGCTGATGAAACTTGTGA
CAGGCTGCATCTTGGTGCTTGTTTGCTTGATGGGCAGTGCGTTCGTGTCC
ACCAAAGCACAAGTAACATGCCGCACGGTGGTGAATGACTTGTCTCCATG
CATATCCTACGTGTCATACGGCGGGGCCGTGACGACGAACTGTTGCAACG
GAGTGAGGACACTCTACAATGCCGCTCGGTCCACAGCTGACCGTCAGACC
GTGTGTACGTGCTTGAAACAAGCTGTCAGTGGAATCTCGTACACCAGGTA
CCAGCTCGGACTCGCAGCTGGACTTCCCGGCAAATGTGGACTCAACATCC
CTTACCAGATCAGCCCTTCTACTGACTGCAGCAGGGTGCAGTGAGAATGA
TGAACTAGTAGCCATCAGTTATGACGCTGTGTGCTTGGATAATTAAGCAT
GGGGTGAGAGAATAAGAGTGCTGCGCTTCTGTTTGATGGTGTGTTAGTGT
TAAATAGAAGTTGTTAGCGTCATCTGGTGGGATTTATGTTGTCTCATGTT
TTGTTAGGTTCTGTCCCAACCATAAGTACTAAAGAATAAGATTTTGTAAG
TTACGTTTATGGAGTGACAT
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