FC921667

Overview
NameFC921667
Unique NameFC921667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GALM_STRTR (Aldose 1-epimerase OS=Streptococcus thermophilus GN=galM PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 62/195 (31.79%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  106 GSVASNAVGVYDLKKGNFSVKLT-NWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKAKALNKATPVNLAQHTYWNLGGHNSGDILSERIQNFA 687
            G V S  V    ++  N  V  T   GATL   ++P + G L ++ LG+    DY  ++     ++GRVA RIG A +T + + Y L  NEG N LHGG  G     W      N+ +     F  R Y    GFPGD++V++ Y L  + +L +  +A  + ++T  N   H Y+NL   +  D+ S  +Q ++
Sbjct:    9 GKVDSGDVSKISMENNNGVVISTLTTGATLQEFLVPMETGALKNIVLGFSDFEDYYKNNLCACQSIGRVAGRIGKASYTHNMVLYSLPKNEGDNCLHGGPKGMQVQNWNYVTNLNDDYV-ETKFIRRLYSSVDGFPGDVTVSISYRLNNNNRLTILFEAFDVTESTVFNPTNHVYFNLS--DKQDLSSHELQIYS 200          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 60/179 (33.52%), Postives = 96/179 (53.63%), Query Frame = 1
Query:  151 GNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDY-KNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANE-GKNMLHGGKIGFS--DVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTL----VGDKQLRVTMKAKALNK----ATPVNLAQHTYWNLGGHNS 651
            G F V ++N GAT+++  L       I + LG+D++  Y + D+ + GAT+GRVANRI      ++G HY++  NE  +  LHGG  G++    +  + K   +     + F     DG +G+PGD+   V YT+    VG  +L +  +AK L +    +T V+L  H+YWN+G   S
Sbjct:  372 GKFEVSISNHGATIVAAKLNG-----IKLNLGFDNLKGYLREDNPFFGATIGRVANRISKGDLLINGTHYQVGLNELHRTSLHGGTYGYNKRTFLGPIVKTNEKEKETTMEFVLIDLDGTEGYPGDVETKVIYTVRDTGVGG-ELGIEYEAKLLEESGRDSTAVSLTNHSYWNIGNQPS 544          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 60/165 (36.36%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  157 FSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKN-DSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQG--FPGDLSVTVGYTL-VGDKQLRVTMKAK-ALNKATPVNLAQHTYWNL 636
            F     N GA+++ + +  +      V LGY++   Y N DS+YIGAT+GR ANRI   +F+L    Y+L  N G N  H     F    +     QN          Y   D E+   FPGDL VT+ YT+ V  K L +  K K    +ATP+NL  H+Y+NL
Sbjct:  384 FQATFANLGASIVDLKVNGQ-----SVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVNNGVNANHSSIGSFHRKRFLGPIIQNPS-KDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEMVYKGKLTAGEATPINLTNHSYFNL 542          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: YN9A_YEAST (Uncharacterized isomerase YNR071C OS=Saccharomyces cerevisiae GN=YNR071C PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 60/184 (32.61%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  103 HGSVASNAVGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQ----GFPGDLSVTVGYTL-VGDKQLRVTMKAKAL-NKATPVNLAQHTYWNL 636
            +G      + + D KK  F   +   GATL+ + +  +      V  GY +V DY  D + +GATVGR ANRI    F+LD   +KL  N   N  H      +   +K    +N     +++      D  Q     FPGDL VTV YTL V +  L +  +A+ +   ATP+N+  H+Y+NL
Sbjct:    5 NGDNKYGVITIGDEKK--FQATIAPLGATLVDLKVNGQ-----SVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSSISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNL 181          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.231e-15
Identity = 61/190 (32.11%), Postives = 87/190 (45.79%), Query Frame = 1
Query:  121 NAVGVYDLKKG-------NFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYK-NDSSYIGATVGRVANRIGGAQFTLDGIHYKLVANE-GKNMLHGGKIGFSDVVWKVEKYQNEGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQLRVTMKA-----KALNKATPVNLAQHTYWNLGGHN 648
            N +G+ D K         +  V + N+GA + +V    ++     +  G++  + YK  ++ + GAT+GR ANRI   QF +DG  Y L  NE  K  LHGG  GF    +     +       + F     DG  GFP DL   V YT + +  L +  K+       LN  T VNL  H+YWNL   N
Sbjct:  359 NTLGIMDYKNRLHTICFQDLEVSIANYGALVQAVRYKGRN-----LVNGFNDFSRYKLKENPFFGATIGRFANRIANGQFEVDGHLYTLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSDLETLVKYT-IKNNSLEIEYKSVIPEYSKLN-VTAVNLTNHSYWNLASPN 541          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: YH10_YEAST (Uncharacterized isomerase YHR210C OS=Saccharomyces cerevisiae GN=YHR210C PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.198e-15
Identity = 60/177 (33.90%), Postives = 93/177 (52.54%), Query Frame = 1
Query:  127 VGVYDLKKGNFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDS-SYIGATVGRVANRIGGAQFTLDGIHYKLVANEGKNMLHGGKIGFSDVVWKVEKYQNEGHAPHII----FAYRSYDGEQGFPGDLSVTVGYTL-VGDKQLRVTMKAKALN-KATPVNLAQHTYWNL 636
            + + D KK      ++  GATL+ + + ++      + LGY  ++ Y +D  +YIGATVGR ANRI    F+++   ++L  N   N  H     F    +K  K QN     +I+       R+   E  FPGDL+V + YTL V D  L +  +AK ++ +ATP+N+  HTY+NL
Sbjct:   13 ITIGDAKK--LQATISELGATLLDLKVNNE-----SIVLGYPDIHGYISDGYNYIGATVGRYANRIYKGMFSMEDGPHQLTVNNCGNTNHSSISSFHLKKYKASKVQNPLDDLYIVEFTLLDDRTLPNE--FPGDLAVNLKYTLNVADMTLDLEYEAKLVSGEATPINMTNHTYFNL 180          
BLAST of FC921667 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 62/188 (32.98%), Postives = 92/188 (48.94%), Query Frame = 1
Query:  133 VYDLKKG-NFSVKLTNWGATLISVVLPDKHGKLIDVALGYDSVNDYKNDSS-YIGATVGRVANRIGGAQFTLDGIHYKL-VANEGKNMLHGGKIGFSDVVWKVEKYQN-EGHAPHIIFAYRSYDGEQGFPGDLSVTVGYTLVGDKQ-LRVTMKAKALNK-ATPVNLAQHTYWNLGGHNSGDILSERIQ 678
            V  L KG +F VKL N GAT++ +V+         V    D+  +YK+ S+ + GATVG  ANRI    F ++G   +L V+ E  N++H G   +    +     +N E H     F Y   D E  FP  LS  V Y +  +K+ L V  ++K   + +T  N+  HTY+NL   N   I   ++Q
Sbjct:  364 VVSLGKGTSFEVKLANLGATIVDIVVNG-----CSVVASLDNETEYKDQSNPFFGATVGPYANRIANGTFEINGKRIQLTVSKEDGNVVHSGINSYHSKKFLGPIVKNPEAHIWTADFKY--VDEETEFPARLSTLVRYKVDSEKKTLTVEYESKVAGQGSTGANITNHTYFNLNKFNEATIKGSKVQ 544          
The following BLAST results are available for this feature:
BLAST of FC921667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GALM_STRTR7.431e-2031.79Aldose 1-epimerase OS=Streptococcus thermophilus G... [more]
GAL10_PACTA8.216e-1933.52Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GAL10_YEAST4.985e-1636.36Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
YN9A_YEAST3.231e-1532.61Uncharacterized isomerase YNR071C OS=Saccharomyces... [more]
GAL10_SCHPO3.231e-1532.11Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
YH10_YEAST7.198e-1533.90Uncharacterized isomerase YHR210C OS=Saccharomyces... [more]
GAL10_KLULA1.357e-1332.98Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]

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Properties
Property NameValue
Genbank descriptionC32107H12EF RVDevelopN Citrus clementina cDNA clone C32107H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921667 ID=FC921667; Name=FC921667; organism=Citrus clementina; type=EST; length=692bp
GGAGAAGACCAAAGTGGTTTCATCTTTTTGTGTAGGAAAATAAAAATGAG
GAGTTCTCTGGTGCTGTGTTTTGTCGTGTTAGTTGCTTTTGGGTTTGTTG
TTCATGGTTCTGTAGCTAGTAATGCCGTTGGAGTTTATGATCTCAAGAAG
GGAAATTTCTCTGTGAAGCTCACTAACTGGGGTGCCACTCTTATTTCTGT
TGTTCTTCCCGACAAGCATGGAAAGCTGATTGATGTTGCCCTTGGATATG
ATTCAGTCAATGACTACAAGAATGATTCATCTTACATTGGAGCAACTGTT
GGACGGGTTGCTAATAGAATCGGAGGTGCCCAATTTACCTTGGACGGAAT
CCATTATAAGCTAGTTGCCAATGAAGGCAAAAACATGCTTCACGGTGGCA
AAATAGGCTTTAGTGATGTTGTTTGGAAAGTCGAGAAGTATCAGAATGAA
GGCCATGCTCCTCACATTATCTTTGCCTACCGCAGCTATGATGGCGAACA
AGGATTCCCTGGGGATCTCTCTGTCACTGTGGGCTACACTCTTGTTGGAG
ACAAGCAGCTGAGAGTAACAATGAAAGCCAAAGCTCTAAACAAAGCTACT
CCGGTAAATCTAGCACAACACACATACTGGAATCTGGGTGGACACAACAG
TGGTGATATCCTGTCCGAAAGAATCCAGAATTTTGCTTCTTA
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