FC921674

Overview
NameFC921674
Unique NameFC921674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 3.668e-39
Identity = 80/140 (57.14%), Postives = 97/140 (69.29%), Query Frame = 1
Query:  220 MGDATTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            M +  TD  +D  Q +L+ E  CIL+DEND  +G E K NCHL E IE   LLHRAFSVFLFN++ +LLLQQRS  K+T P  +TNTCCSHPL    EL E +ALGVR AAQR+L  ELGI +E+VP +E   L RI Y+
Sbjct:    1 MPEINTDH-LDKQQVQLLAE-MCILIDENDNKIGAETKKNCHLNENIEK-GLLHRAFSVFLFNTENKLLLQQRSDAKITLPGCFTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYK 137          

HSP 2 Score: 40.4318 bits (93), Expect = 3.668e-39
Identity = 15/30 (50.00%), Postives = 24/30 (80.00%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+L   ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEIDYILLVRKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_MOUSE (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus musculus GN=Idi1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 5.168e-38
Identity = 72/131 (54.96%), Postives = 94/131 (71.76%), Query Frame = 1
Query:  247 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E NA+GV+ AA+R+L  ELGI +E+V ++E   L RI Y+
Sbjct:    9 LDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENNAIGVKRAAKRRLKAELGIPLEEVDLNEMDYLTRIYYK 137          

HSP 2 Score: 41.9726 bits (97), Expect = 5.168e-38
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+LF  ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEVDYILFLRKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_RAT (Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattus norvegicus GN=Idi1 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 5.168e-38
Identity = 71/133 (53.38%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  241 AGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            + +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   L+HRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI +E+V ++E   L RI Y+
Sbjct:    7 SNLDEKQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLIHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLNNPGELEENDAMGVKRAAQRRLKAELGIPLEEVDLNEMNYLTRIYYK 137          

HSP 2 Score: 42.3578 bits (98), Expect = 5.168e-38
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+LF  ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEIDYILFLRKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_MESAU (Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesocricetus auratus GN=IDI1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.143e-37
Identity = 72/131 (54.96%), Postives = 93/131 (70.99%), Query Frame = 1
Query:  247 MDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            +D  Q +L+ E  CIL+DEND  +G + K NCHL E I+   LLHRAFSVFLFN++ +LLLQQRS  K+TFP  +TN+CCSHPL    EL E +A+GV+ AAQR+L  ELGI +E+V  +E   L RI Y+
Sbjct:    9 LDEQQVQLLAE-MCILIDENDNKIGADTKKNCHLNENIDK-GLLHRAFSVFLFNTENKLLLQQRSDAKITFPGCFTNSCCSHPLSNPGELEENDAIGVKRAAQRRLKAELGIPLEEVDPNEMHYLTRIYYK 137          

HSP 2 Score: 42.743 bits (99), Expect = 1.143e-37
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            +A SDG WGEHE+DY+LF  ++V++ P+P+
Sbjct:  137 KAQSDGIWGEHEIDYILFLKKNVTLNPDPN 166          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_PHARH (Isopentenyl-diphosphate Delta-isomerase OS=Phaffia rhodozyma GN=IDI PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.437e-34
Identity = 72/131 (54.96%), Postives = 86/131 (65.65%), Query Frame = 1
Query:  250 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIES-LNLLHRAFSVFLFN-SKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILY 636
            D  Q RLM E+ CILV+ +D   G  +K  CHLM  I +  +LLHRAFSVFLF  S   LLLQ+R+  K+TFP +WTNTCCSHPL  + E+ EEN +GVR AA RKL  ELG+     P D FT L RI Y
Sbjct:   23 DEEQVRLM-EERCILVNPDDVAYGEASKKTCHLMSNINAPKDLLHRAFSVFLFRPSDGALLLQRRADEKITFPGMWTNTCCSHPLSIKGEVKEENQIGVRRAASRKLEHELGVPTSSTPPDSFTYLTRIHY 152          

HSP 2 Score: 40.4318 bits (93), Expect = 1.437e-34
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  639 APSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            APSDG WGEHE+DY+LF+        NP+
Sbjct:  154 APSDGLWGEHEIDYILFSTTPTEHTGNPN 182          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI2_HUMAN (Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo sapiens GN=IDI2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.193e-33
Identity = 69/127 (54.33%), Postives = 91/127 (71.65%), Query Frame = 1
Query:  235 TDAGMDAVQRRLM--FEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDE 609
            +D  +D V RR +   E+  I+VDEND+V+G + K NCHL E IE   LLHRAFSV LFN+K  +L+QQRS TKVTFP  +T++C SHPLY  +EL E++A+GVR AAQR+L  ELGI  E +  ++
Sbjct:    2 SDINLDWVDRRQLQRLEEMLIVVDENDKVIGADTKRNCHLNENIEK-GLLHRAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRRLQAELGIPGEQISPED 127          

HSP 2 Score: 34.2686 bits (77), Expect = 1.193e-33
Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRDVSVYPNP 722
            +A SD  WGEHE+ YLL   ++V++ P+P
Sbjct:  137 KAKSDRIWGEHEICYLLLVRKNVTLNPDP 165          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_SCHPO (Isopentenyl-diphosphate Delta-isomerase OS=Schizosaccharomyces pombe GN=idi1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.553e-33
Identity = 71/132 (53.79%), Postives = 87/132 (65.91%), Query Frame = 1
Query:  250 DAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESE---LIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILY 636
            D  Q RLM E+ CI+VDEND  + +  K  CHLME I    LLHRAFS+F+F+ +  LLLQQR+  K+TFP +WTNTCCSHPL    E    + E   GV+NAAQRKL  ELGI  + +P D+F  L RI Y
Sbjct:   11 DEEQLRLM-EEVCIVVDENDVPLRYGTKKECHLMENINK-GLLHRAFSMFIFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGVKNAAQRKLFHELGIQAKYIPKDKFQFLTRIHY 140          

HSP 2 Score: 38.1206 bits (87), Expect = 1.553e-33
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 3
Query:  639 APSDGKWGEHELDYLLFTVRDVSVYPNPD 725
            APS G WGEHE+DY+LF    V +  NP+
Sbjct:  142 APSTGAWGEHEIDYILFFKGKVELDINPN 170          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI_DICDI (Isopentenyl-diphosphate Delta-isomerase OS=Dictyostelium discoideum GN=ipi PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.941e-30
Identity = 68/133 (51.13%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  244 GMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLY-RESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFTPLGRILYR 639
            G + +Q  LM ++ECI+VD +D+ +   +K   HLM  I +  LLHRAFS+FLFN + +LLLQQR+  K+TFP  WTNT CSHPL+   SEL+EENA GV+ AA+RKL  ELG+ ++ V +D+FT + +I Y+
Sbjct:   15 GHNEIQIELM-KEECIVVDNDDKPIRPGSKKETHLMVNINN-GLLHRAFSIFLFNGEGKLLLQQRALEKITFPGYWTNTVCSHPLWIVGSELVEENAQGVKIAAKRKLNHELGVPLDQVNIDDFTFMTKIHYK 145          

HSP 2 Score: 29.261 bits (64), Expect = 1.941e-30
Identity = 11/31 (35.48%), Postives = 20/31 (64.52%), Query Frame = 3
Query:  636 QAPSDGKWGEHELDYLLFTVRD---VSVYPN 719
            ++  D +WGEHE+D++L   +D   ++  PN
Sbjct:  147 ESKEDPQWGEHEIDHILIMQKDGITINAEPN 177          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI1_YEAST (Isopentenyl-diphosphate Delta-isomerase OS=Saccharomyces cerevisiae GN=IDI1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.718e-28
Identity = 69/141 (48.94%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  232 TTDAGMDAVQRRLMFEDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESEL-----IEENALGVRNAAQRKLLDELGICVEDVPV-DEFTPLGRILY 636
            T  +G D  Q +LM E+ CI++D +D  +G   K  CHLME IE   LLHRAFSVF+FN + ELLLQQR+  K+TFP +WTNTCCSHPL  + EL     +++   G   AA RKL  ELGI  ++     +F  L RI Y
Sbjct:   57 TCFSGHDEEQIKLMNEN-CIVLDWDDNAIGAGTKKVCHLMENIEK-GLLHRAFSVFIFNEQGELLLQQRATEKITFPDLWTNTCCSHPLCIDDELGLKGKLDDKIKGAITAAVRKLDHELGIPEDETKTRGKFHFLNRIHY 195          

HSP 2 Score: 33.8834 bits (76), Expect = 1.718e-28
Identity = 15/31 (48.39%), Postives = 21/31 (67.74%), Query Frame = 3
Query:  639 APSDGKWGEHELDYLLF----TVRDVSVYPN 719
            APS+  WGEHE+DY+LF       +++V PN
Sbjct:  197 APSNEPWGEHEIDYILFYKINAKENLTVNPN 227          
BLAST of FC921674 vs. ExPASy Swiss-Prot
Match: IDI_SERP5 (Isopentenyl-diphosphate Delta-isomerase OS=Serratia proteamaculans (strain 568) GN=idi PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.841e-15
Identity = 46/113 (40.71%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  277 EDECILVDENDRVVGHENKYNCHLMEKIESLNLLHRAFSVFLFNSKYELLLQQRSGTKVTFPLVWTNTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICVEDVPVDEFT 615
            ++  ILVD +D  +G ++K   H         LLHRAFS+F+F+S+  LLLQQR+ +K     +WTN+CC HP + ES L          AAQR+L +E+G   E   V  FT
Sbjct:    2 DEMLILVDADDNAIGSQSKTRVHQQ------GLLHRAFSIFIFDSQGRLLLQQRAFSKYHSAGLWTNSCCGHPRWGESTLA---------AAQRRLQEEMGFSAELQQVSSFT 99          
The following BLAST results are available for this feature:
BLAST of FC921674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IDI1_PONAB3.668e-3957.14Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_MOUSE5.168e-3854.96Isopentenyl-diphosphate Delta-isomerase 1 OS=Mus m... [more]
IDI1_RAT5.168e-3853.38Isopentenyl-diphosphate Delta-isomerase 1 OS=Rattu... [more]
IDI1_MESAU1.143e-3754.96Isopentenyl-diphosphate Delta-isomerase 1 OS=Mesoc... [more]
IDI1_PHARH1.437e-3454.96Isopentenyl-diphosphate Delta-isomerase OS=Phaffia... [more]
IDI2_HUMAN1.193e-3354.33Isopentenyl-diphosphate Delta-isomerase 2 OS=Homo ... [more]
IDI1_SCHPO1.553e-3353.79Isopentenyl-diphosphate Delta-isomerase OS=Schizos... [more]
IDI_DICDI1.941e-3051.13Isopentenyl-diphosphate Delta-isomerase OS=Dictyos... [more]
IDI1_YEAST1.718e-2848.94Isopentenyl-diphosphate Delta-isomerase OS=Sacchar... [more]
IDI_SERP57.841e-1540.71Isopentenyl-diphosphate Delta-isomerase OS=Serrati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108A07EF RVDevelopN Citrus clementina cDNA clone C32108A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921674 ID=FC921674; Name=FC921674; organism=Citrus clementina; type=EST; length=726bp
CATATTGAGGTCCCTCTGTCTACTACTACGCTTTATAACTGCGCCACAAC
CAAACTCTGCTCCTCACTAATCAACAACTCTTCTTCTTTCTCGAAGTCCC
GTCTATTTTTCTCCTCTTCCCATTTCGCCCCTAGGGTTTCTTCGATTCGC
AGGCCTCTGTCCTTGAGGGGTGCCTCTCGTTCTAGCTCTTCTTCTTCTTC
CGCTCGCGCAATCAGCACTATGGGTGACGCTACTACTGATGCCGGCATGG
ACGCTGTCCAGCGCCGCCTCATGTTTGAAGACGAATGCATTTTGGTGGAT
GAGAATGATCGCGTTGTTGGTCATGAAAACAAATACAACTGTCACTTGAT
GGAAAAGATTGAGTCTTTGAATTTGCTACACAGAGCCTTCAGCGTATTTT
TGTTTAACTCAAAATATGAGCTACTCCTTCAGCAACGCTCTGGAACCAAA
GTTACCTTCCCTCTTGTGTGGACTAACACCTGCTGCAGCCATCCTCTGTA
CCGTGAATCTGAGCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTG
CACAAAGAAAGCTTTTGGATGAGCTGGGCATTTGTGTTGAAGATGTGCCA
GTTGATGAGTTCACTCCACTGGGTCGCATTCTGTACAGGCCCCTTCTGAT
GGCAAGTGGGGGGAGCATGAACTTGACTACTTACTTTTCACTGTCCGAGA
TGTTAGTGTTTACCCAAATCCTGATG
back to top