FC921677

Overview
NameFC921677
Unique NameFC921677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDKA1_ORYSJ (Cyclin-dependent kinase A-1 OS=Oryza sativa subsp. japonica GN=CDKA-1 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.817e-63
Identity = 115/209 (55.02%), Postives = 158/209 (75.60%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EK EK+GEGTYG VYRAR+K T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     +YLVFEY+D DLKK++ S  +  +N  +  +KS +YQ+ +GVA+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS  YST  DMWSV CIFAE+V ++
Sbjct:    1 MEQYEKEEKIGEGTYGVVYRARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMHHG-NIVRLHDVIHSEKR-----IYLVFEYLDLDLKKFMDSCPEFAKNPTL--IKSYLYQILRGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRQYSTPVDMWSVGCIFAEMVNQK 201          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDC2A_ANTMA (Cell division control protein 2 homolog A OS=Antirrhinum majus GN=CDC2A PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.679e-63
Identity = 112/209 (53.59%), Postives = 158/209 (75.60%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+ +G+A+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST  D+WSV CIFAE+V ++
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHG-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSCPEFSQD--PRLVKMFLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNQR 201          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDC2_VIGAC (Cell division control protein 2 homolog OS=Vigna aconitifolia GN=CDC2 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.398e-62
Identity = 113/209 (54.07%), Postives = 158/209 (75.60%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+  G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST  D+WSV CIFAE+V R+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSSPEFVKD--PRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMVNRR 201          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK2_HUMAN (Cell division protein kinase 2 OS=Homo sapiens GN=CDK2 PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 1.826e-62
Identity = 116/209 (55.50%), Postives = 162/209 (77.51%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ F+K+EK+GEGTYG VY+AR K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +   +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTA D+WS+ CIFAE+VTR+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEG-AIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK3_HUMAN (Cell division protein kinase 3 OS=Homo sapiens GN=CDK3 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62
Identity = 114/209 (54.55%), Postives = 161/209 (77.03%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            MD F+K+EK+GEGTYG VY+A+ + TG++VALKK RL  + EGVP T +RE+S+L+ L + P++VRL+DV   + K     LYLVFE++  DLKKY+ S    G  +P++ +KS ++QL +GV+FCH H ++HRDLKP NLL++ +   +K+AD GLARAF +P++ YTHE++TLWYRAPE+LLGS  Y+TA D+WS+ CIFAE+VTR+
Sbjct:    1 MDMFQKVEKIGEGTYGVVYKAKNRETGQLVALKKIRLDLEMEGVPSTAIREISLLKEL-KHPNIVRLLDVVHNERK-----LYLVFEFLSQDLKKYMDS--TPGSELPLHLIKSYLFQLLQGVSFCHSHRVIHRDLKPQNLLIN-ELGAIKLADFGLARAFGVPLRTYTHEVVTLWYRAPEILLGSKFYTTAVDIWSIGCIFAEMVTRK 200          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK2_CRIGR (Cell division protein kinase 2 OS=Cricetulus griseus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62
Identity = 115/209 (55.02%), Postives = 163/209 (77.99%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTA D+WS+ CIFAE+VTR+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASAVTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDC2_VIGUN (Cell division control protein 2 homolog OS=Vigna unguiculata GN=CDC2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62
Identity = 112/209 (53.59%), Postives = 158/209 (75.60%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EK+EK+GEGTYG VY+AR++ T + +ALKK RL ++DEGVP T +RE+S+L+ +    ++VRL DV   + +     LYLVFEY+D DLKK++ S  +  ++     VK  +YQ+  G+A+CH H +LHRDLKP NLL+DR+T +LK+AD GLARAF +P++ +THE++TLWYRAPE+LLGS HYST  D+WSV C+FAE+V R+
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKARDRVTDETIALKKIRLEQEDEGVPSTAIREISLLKEMQHR-NIVRLQDVVHSEKR-----LYLVFEYLDLDLKKHMDSSPEFVKD--PRQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRRTNSLKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCLFAEMVNRR 201          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDC2_MAIZE (Cell division control protein 2 homolog OS=Zea mays GN=CDC2 PE=2 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.114e-62
Identity = 112/209 (53.59%), Postives = 159/209 (76.08%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EK+EK+GEGTYG VY+A +KAT + +ALKK RL ++DEGVP T +RE+S+L+ ++   ++VRL DV   + +     +YLVFEY+D DLKK++ S  +  +N  +  +KS +YQ+  GVA+CH H +LHRDLKP NLL+DR+T  LK+AD GLARAF +P++ +THE++TLWYRAPE+LLG+  YST  D+WSV CIFAE+V ++
Sbjct:    1 MEQYEKVEKIGEGTYGVVYKALDKATNETIALKKIRLEQEDEGVPSTAIREISLLKEMNHG-NIVRLHDVVHSEKR-----IYLVFEYLDLDLKKFMDSCPEFAKNPTL--IKSYLYQILHGVAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGARQYSTPVDVWSVGCIFAEMVNQK 201          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK2_RAT (Cell division protein kinase 2 OS=Rattus norvegicus GN=Cdk2 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.312e-62
Identity = 114/209 (54.55%), Postives = 163/209 (77.99%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  +P+  +KS ++QL +G+AFCH H +LHRDLKP NLL++ +  ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTA D+WS+ CIFAE+VTR+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--LPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINAEG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK2_BOVIN (Cell division protein kinase 2 OS=Bos taurus GN=CDK2 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 5.312e-62
Identity = 115/209 (55.02%), Postives = 162/209 (77.51%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ F+K+EK+GEGTYG VY+A+ K TG++VALKK RL  + EGVP T +RE+S+L+ L+  P++V+L+DV   +NK     LYLVFE++  DLKK++ +   TG  IP+  +KS ++QL +G+AFCH H +LHRDLKP NLL++    ++K+AD GLARAF +P++ YTHE++TLWYRAPE+LLG  +YSTA D+WS+ CIFAE+VTR+
Sbjct:    1 MENFQKVEKIGEGTYGVVYKAKNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNH-PNIVKLLDVIHTENK-----LYLVFEFLHQDLKKFMDASALTG--IPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINADG-SIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 200          
The following BLAST results are available for this feature:
BLAST of FC921677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKA1_ORYSJ2.817e-6355.02Cyclin-dependent kinase A-1 OS=Oryza sativa subsp.... [more]
CDC2A_ANTMA3.679e-6353.59Cell division control protein 2 homolog A OS=Antir... [more]
CDC2_VIGAC1.398e-6254.07Cell division control protein 2 homolog OS=Vigna a... [more]
CDK2_HUMAN1.826e-6255.50Cell division protein kinase 2 OS=Homo sapiens GN=... [more]
CDK3_HUMAN3.114e-6254.55Cell division protein kinase 3 OS=Homo sapiens GN=... [more]
CDK2_CRIGR3.114e-6255.02Cell division protein kinase 2 OS=Cricetulus grise... [more]
CDC2_VIGUN3.114e-6253.59Cell division control protein 2 homolog OS=Vigna u... [more]
CDC2_MAIZE3.114e-6253.59Cell division control protein 2 homolog OS=Zea may... [more]
CDK2_RAT5.312e-6254.55Cell division protein kinase 2 OS=Rattus norvegicu... [more]
CDK2_BOVIN5.312e-6255.02Cell division protein kinase 2 OS=Bos taurus GN=CD... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32108A10EF RVDevelopN Citrus clementina cDNA clone C32108A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921677 ID=FC921677; Name=FC921677; organism=Citrus clementina; type=EST; length=646bp
AAGAATGGTGATGGACGCATTTGAGAAGCTAGAGAAAGTAGGAGAAGGGA
CGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCAACTGGGAAGATCGTT
GCTCTCAAGAAGACTCGTCTCCACGAGGACGATGAAGGCGTACCCCCAAC
CACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCTCTCGCGATCCCCATG
TTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGCAGGACG
GTGCTCTACCTTGTTTTTGAGTACATGGACACTGATCTGAAGAAGTACAT
CCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTGTTAACACTGTCAAGA
GCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCATGGACATGGA
ATCCTTCATAGGGACCTTAAGCCTCACAATCTGTTGATGGACCGAAAGAC
TATGACACTTAAGATAGCAGATCTTGGTTTAGCTCGAGCATTTACTCTTC
CAATTAAGAAATATACTCATGAGATATTGACCCTCTGGTATAGGGCTCCG
GAAGTCCTTTTGGGGTCCACCCATTACTCAACTGCAGGTGATATGTGGTC
TGTTGCCTGTATATTTGCGGAACTGGTTACAAGACAGCACTTTTCC
back to top