FC921677

Overview
NameFC921677
Unique NameFC921677
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length646
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDKL4_MOUSE (Cyclin-dependent kinase-like 4 OS=Mus musculus GN=Cdkl4 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.273e-39
Identity = 84/209 (40.19%), Postives = 133/209 (63.64%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EKL K+GEG+YG V++ R K++G++VA+KK    EDD  V    LRE+ +L+ L + P++V L++V + + K     ++LVFEY D  L   +    +    +    +KS+++Q  + + FCH H  +HRD+KP N+L+ ++ M +KI D G AR   +P   YT  + T WYRAPE+L+G T Y ++ D+W+V C+FAEL+T Q
Sbjct:    1 MEKYEKLAKIGEGSYGVVFKCRNKSSGQVVAIKKFVESEDDRVVRKIALREIRMLKQL-KHPNLVNLIEVFRRKRK-----MHLVFEYCDHTL---LNELERNPNGVSDGVIKSVLWQTLQALNFCHKHNCIHRDVKPENILITKQGM-IKICDFGFAR-ILIPGDAYTDYVATRWYRAPELLVGDTKYGSSVDVWAVGCVFAELLTGQ 198          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK7_MOUSE (Cell division protein kinase 7 OS=Mus musculus GN=Cdk7 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.663e-39
Identity = 88/211 (41.71%), Postives = 135/211 (63.98%), Query Frame = 2
Query:   20 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQHF 643
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYRAPE+L G+  Y    DMW+V CI AEL+ R  F
Sbjct:   12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPF 212          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK7_HUMAN (Cell division protein kinase 7 OS=Homo sapiens GN=CDK7 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.663e-39
Identity = 88/211 (41.71%), Postives = 135/211 (63.98%), Query Frame = 2
Query:   20 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQHF 643
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYRAPE+L G+  Y    DMW+V CI AEL+ R  F
Sbjct:   12 YEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPF 212          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK4_HUMAN (Cell division protein kinase 4 OS=Homo sapiens GN=CDK4 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.172e-39
Identity = 95/216 (43.98%), Postives = 133/216 (61.57%), Query Frame = 2
Query:    5 MVMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEG---VPPTTLREVSILRMLS--RDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M    +E + ++G G YG VY+AR+  +G  VALK  R+     G   +P +T+REV++LR L     P+VVRLMDV      +    + LVFE++D DL+ Y+      G  +P  T+K LM Q  +G+ F H + I+HRDLKP N+L+     T+K+AD GLAR ++  +   T  ++TLWYRAPEVLL ST Y+T  DMWSV CIFAE+  R+
Sbjct:    1 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPG--LPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILV-TSGGTVKLADFGLARIYSYQM-ALTPVVVTLWYRAPEVLLQST-YATPVDMWSVGCIFAEMFRRK 211          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK8_DICDI (Probable cyclin-dependent kinase 8 OS=Dictyostelium discoideum GN=cdk8 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.838e-39
Identity = 84/205 (40.98%), Postives = 133/205 (64.88%), Query Frame = 2
Query:   35 KVGEGTYGKVYRAREKAT-GKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLM---DRKTMTLKIADLGLARAFTLPIKKYTHE--ILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVT 631
            ++G GTYG VY+A +K      VA+KK R  ++ EG+  T  RE+ +L+ LS + ++V+L+DV      +   +LYL+F+Y + DL   I+  R+ G +    T+KSL++Q+  G+ + H + ++HRDLKP N+L+    ++  T+KI D GLAR F  P+K       ++T+WYR+PE+LLGS HY+ A D+W++ CIFAEL+T
Sbjct:   49 EIGSGTYGMVYKADDKKRPNNKVAVKKFRSTKEGEGLSLTAYREIGLLKELSNE-NIVKLLDVCLNPKDK---LLYLIFDYAEFDLFGIIKYHRENGSHFSDATIKSLIWQVLNGIHYLHSNWVIHRDLKPSNILVMGEGKECGTVKIGDFGLARIFQSPLKPLNENGVVVTIWYRSPELLLGSKHYTRAVDIWAIGCIFAELIT 249          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK11_DICDI (PITSVRE serine/threonine protein-kinase cdk11 OS=Dictyostelium discoideum GN=cdk11 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.078e-38
Identity = 83/209 (39.71%), Postives = 139/209 (66.51%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            +D F+KL  + EG +G VY A++K T +IVALKK ++  + EG+P T++RE+ +L  L  D ++V++ ++  G+N      +++  E++D DL+  +   ++    +P + +K+L+ QL  GV++ H + ++HRDLK  NLL   K + LKIAD GLAR +  P+K  +  ++TLWYRAPE+LL +  Y+ A D+WSV CIFAE+++++
Sbjct:   49 VDCFKKLYTINEGAFGVVYCAQDKETEEIVALKKIKMEREREGIPITSVREIKVLMELKHD-NIVQIKEIVLGKNINS---IFMAMEFIDHDLRGLMEVIKKPF--LP-SEIKTLIQQLLNGVSYMHDNWVIHRDLKTANLLYTNKGV-LKIADFGLAREYGSPLKPLSKGVVTLWYRAPELLLDTEIYTPAIDIWSVGCIFAEIISKE 249          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK7_RAT (Cell division protein kinase 7 (Fragment) OS=Rattus norvegicus GN=Cdk7 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.408e-38
Identity = 88/210 (41.90%), Postives = 133/210 (63.33%), Query Frame = 2
Query:   23 EKLEKVGEGTYGKVYRAREKATGKIVALKKTRL---HEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQHF 643
            EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E  +G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+        +  + +K+ M    +G+ + H H ILHRDLKP+NLL+D   + LK+AD GLA++F  P   YTH+++T WYRAPE+L G+  Y    DMW+V CI AEL+ R  F
Sbjct:    5 EKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKDNSLV---LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNWAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPF 204          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDKL1_HUMAN (Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=CDKL1 PE=2 SV=5)

HSP 1 Score: 159.073 bits (401), Expect = 1.839e-38
Identity = 79/207 (38.16%), Postives = 131/207 (63.29%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVT 631
            M+ +EK+ K+GEG+YG V++ R + TG+IVA+KK    EDD  +    LRE+ +L+ L + P++V L++V + + +     L+LVFEY D  +   +  +++    +P + VKS+ +Q  + V FCH H  +HRD+KP N+L+ + ++ +K+ D G AR    P   YT  + T WYR+PE+L+G T Y    D+W++ C+FAEL++
Sbjct:    1 MEKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL-KHPNLVNLLEVFRRKRR-----LHLVFEYCDHTVLHELDRYQR---GVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSV-IKLCDFGFARLLAGPSDYYTDYVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLS 197          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDK7_XENLA (Cell division protein kinase 7 OS=Xenopus laevis GN=cdk7 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.401e-38
Identity = 88/211 (41.71%), Postives = 135/211 (63.98%), Query Frame = 2
Query:   20 FEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLH---EDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQHF 643
            +EKL+ +GEG +  VY+AR+K T +IVA+KK +L    E ++G+  T LRE+ +L+ LS  P+++ L+D    ++      + LVF++M+TDL+  I+    T   +    +KS M    +G+ + H   ILHRDLKP+NLL+D   + LK+AD GLA++F  P + YTH+++T WYR+PE+L G+  Y    DMW+V CI AEL+ R  F
Sbjct:   18 YEKLDFLGEGQFATVYKARDKNTDRIVAIKKIKLGHRAEANDGINRTALREIKLLQELSH-PNIIGLLDAFGHKSN-----ISLVFDFMETDLEVIIKD---TSLVLTPAHIKSYMLMTLQGLEYLHHLWILHRDLKPNNLLLDENGV-LKLADFGLAKSFGSPNRIYTHQVVTRWYRSPELLFGARMYGVGVDMWAVGCILAELLLRVPF 218          
BLAST of FC921677 vs. ExPASy Swiss-Prot
Match: CDKL4_HUMAN (Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=CDKL4 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38
Identity = 81/209 (38.76%), Postives = 131/209 (62.68%), Query Frame = 2
Query:   11 MDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPPTTLREVSILRMLSRDPHVVRLMDVKQGQNKEGRTVLYLVFEYMDTDLKKYIRSFRQTGENIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPIKKYTHEILTLWYRAPEVLLGSTHYSTAGDMWSVACIFAELVTRQ 637
            M+ +EKL K GEG+YG V++ R K +G++VA+KK    EDD  V    LRE+ +L+ L + P++V L++V + + K     ++LVFEY D  L   +    +    +    +KS+++Q  + + FCH H  +HRD+KP N+L+ ++ + +KI D G A+   +P   YT  + T WYRAPE+L+G T Y ++ D+W++ C+FAEL+T Q
Sbjct:    1 MEKYEKLAKTGEGSYGVVFKCRNKTSGQVVAVKKFVESEDDPVVKKIALREIRMLKQL-KHPNLVNLIEVFRRKRK-----MHLVFEYCDHTL---LNELERNPNGVADGVIKSVLWQTLQALNFCHIHNCIHRDIKPENILITKQGI-IKICDFGFAQIL-IPGDAYTDYVATRWYRAPELLVGDTQYGSSVDIWAIGCVFAELLTGQ 198          
The following BLAST results are available for this feature:
BLAST of FC921677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CDKL4_MOUSE1.273e-3940.19Cyclin-dependent kinase-like 4 OS=Mus musculus GN=... [more]
CDK7_MOUSE1.663e-3941.71Cell division protein kinase 7 OS=Mus musculus GN=... [more]
CDK7_HUMAN1.663e-3941.71Cell division protein kinase 7 OS=Homo sapiens GN=... [more]
CDK4_HUMAN2.172e-3943.98Cell division protein kinase 4 OS=Homo sapiens GN=... [more]
CDK8_DICDI4.838e-3940.98Probable cyclin-dependent kinase 8 OS=Dictyosteliu... [more]
CDK11_DICDI1.078e-3839.71PITSVRE serine/threonine protein-kinase cdk11 OS=D... [more]
CDK7_RAT1.408e-3841.90Cell division protein kinase 7 (Fragment) OS=Rattu... [more]
CDKL1_HUMAN1.839e-3838.16Cyclin-dependent kinase-like 1 OS=Homo sapiens GN=... [more]
CDK7_XENLA2.401e-3841.71Cell division protein kinase 7 OS=Xenopus laevis G... [more]
CDKL4_HUMAN5.349e-3838.76Cyclin-dependent kinase-like 4 OS=Homo sapiens GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32108A10EF RVDevelopN Citrus clementina cDNA clone C32108A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921677 ID=FC921677; Name=FC921677; organism=Citrus clementina; type=EST; length=646bp
AAGAATGGTGATGGACGCATTTGAGAAGCTAGAGAAAGTAGGAGAAGGGA
CGTACGGGAAAGTATACAGAGCAAGAGAGAAGGCAACTGGGAAGATCGTT
GCTCTCAAGAAGACTCGTCTCCACGAGGACGATGAAGGCGTACCCCCAAC
CACTCTCCGGGAGGTCTCCATCTTGCGCATGCTCTCTCGCGATCCCCATG
TTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGCAGGACG
GTGCTCTACCTTGTTTTTGAGTACATGGACACTGATCTGAAGAAGTACAT
CCGAAGCTTCCGCCAAACTGGAGAGAACATTCCTGTTAACACTGTCAAGA
GCTTAATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCATGGACATGGA
ATCCTTCATAGGGACCTTAAGCCTCACAATCTGTTGATGGACCGAAAGAC
TATGACACTTAAGATAGCAGATCTTGGTTTAGCTCGAGCATTTACTCTTC
CAATTAAGAAATATACTCATGAGATATTGACCCTCTGGTATAGGGCTCCG
GAAGTCCTTTTGGGGTCCACCCATTACTCAACTGCAGGTGATATGTGGTC
TGTTGCCTGTATATTTGCGGAACTGGTTACAAGACAGCACTTTTCC
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