FC921681

Overview
NameFC921681
Unique NameFC921681
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: HIBCH_YEAST (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Saccharomyces cerevisiae GN=EHD3 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.183e-15
Identity = 50/143 (34.97%), Postives = 76/143 (53.15%), Query Frame = 2
Query:  173 RLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGR--AFSAGGDLKMFYDGRNSKDSCLEVVYRM--YWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRL 589
            R++TLNRP++LN +++++   + + L ++ K D   LVI+K   R  +F AGGD+        +K+    + +    Y L   I TY K  V    GITMGGG  L +   F + TE T ++ PE  IGF  D G +F   R+
Sbjct:   48 RVITLNRPKKLNALNAEMSESMFKTLNEYAKSDTTNLVILKSSNRPRSFCAGGDVATVAIFNFNKEFAKSIKFFTDEYSLNFQIATYLKPIVTFMDGITMGGGVGLSIHTPFRIATENTKWAMPEMDIGFFPDVGSTFALPRI 190          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.650e-12
Identity = 47/150 (31.33%), Postives = 77/150 (51.33%), Query Frame = 2
Query:  170 VRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL 619
            V ++T++ P   N +SS+++  L+  L++ E D   + +I+ G GR FSAG D+K F   + ++DS L +  R   L   I ++ K  +A  HG  +GGG  L +     +  E      PE ++G     GF+    RLP ++G   AL
Sbjct:   12 VAVLTIHNP-PANALSSRILEELSSCLDQCETDAGVRSIIIHGEGRFFSAGADIKEFTSLKGNEDSSL-LAERGQQLMERIESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIP--GFAGT-QRLPRYVGTAKAL 156          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: ECHM_DICDI (Probable enoyl-CoA hydratase, mitochondrial OS=Dictyostelium discoideum GN=echs1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.036e-11
Identity = 43/139 (30.94%), Postives = 68/139 (48.92%), Query Frame = 2
Query:  155 EEIGNVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLC--HHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCG 565
            E+ G V LVTLNRP+ LN +S  ++S +   ++ +++D     +I+ G  +AF+AG D+K        +   L   Y    L   H +   +K  +A  +G  +GGG  L +     +  EK VF  PE  +G    CG
Sbjct:   29 EKKGRVGLVTLNRPKSLNALSDGLISEINSAVKLFQEDKDVGSIIITGSEKAFAAGADIK------EMEKVTLPDAYNNDLLAQWHDLTKIRKPIIAAVNGYALGGGCELAMMCDIIIAGEKAVFGQPEIKLGTIPGCG 161          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.353e-11
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  140 QVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL 619
            Q ++ E+ G   +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +AF+AG D+K     R  +D C    +  +W   HI   KK  +A  +G  +GGG  L +        EK  F  PE  +G     G +    RL   +G+ LA+
Sbjct:   34 QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEQDPAVGAIVLTGGDKAFAAGADIKEM-QNRTFQD-CYSSKFLSHW--DHITRVKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAM 189          
BLAST of FC921681 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.308e-11
Identity = 49/163 (30.06%), Postives = 80/163 (49.08%), Query Frame = 2
Query:  140 QVVLGEEIG---NVRLVTLNRPRQLNVISSKVVSLLAEYLEKWEKDDRAKLVIVKGVGRAFSAGGDLKMFYDGRNSKDSCLEVVYRMYWLCHHIHTYKKTQVALAHGITMGGGASLMVPLKFSVVTEKTVFSTPEASIGFHTDCGFSFIHSRLPGHLGEFLAL 619
            Q ++ E+ G   +V L+ LNRP+ LN + + ++  L + LE +E+D     +++ G  +AF+AG D+K     R  +D C    +  +W   HI   KK  +A  +G  +GGG  L +        EK  F  PE  +G     G +    RL   +G+ LA+
Sbjct:   34 QYIITEKKGKNSSVGLIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEM-QNRTFQD-CYSGKFLSHW--DHITRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGT---QRLTRAVGKSLAM 189          
The following BLAST results are available for this feature:
BLAST of FC921681 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
HIBCH_YEAST1.183e-1534.973-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
FADB_BACSU4.650e-1231.33Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
ECHM_DICDI1.036e-1130.94Probable enoyl-CoA hydratase, mitochondrial OS=Dic... [more]
ECHM_MOUSE1.353e-1130.06Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
ECHM_RAT2.308e-1130.06Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]

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Properties
Property NameValue
Genbank descriptionC32108B02EF RVDevelopN Citrus clementina cDNA clone C32108B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921681 ID=FC921681; Name=FC921681; organism=Citrus clementina; type=EST; length=622bp
GATCTTGTCTCTCTCTTCATTGGACAGACTGTTGTTTAACAAAACCTGCA
AGTTCCTCTCTGTTCTTTTTCTTAGCTTTGAATCAGCTAACCTACTAATT
GACTAAATGGCGCAAGGTGTTGTTAAGAACCCAGATGAGCAGGTTGTTCT
TGGAGAAGAAATAGGCAATGTGAGACTGGTCACCTTAAACCGGCCTCGCC
AATTGAATGTCATCTCATCTAAAGTGGTGTCTCTATTGGCAGAATACTTG
GAAAAATGGGAAAAAGATGACCGAGCTAAGCTTGTAATAGTCAAGGGAGT
TGGCCGAGCTTTTTCTGCTGGTGGGGATTTGAAAATGTTTTATGATGGGA
GGAACTCAAAGGATTCCTGCCTCGAAGTGGTCTATAGAATGTATTGGCTT
TGCCATCACATTCATACCTATAAGAAAACCCAGGTAGCTCTTGCTCATGG
AATTACAATGGGAGGAGGCGCGTCTTTGATGGTTCCTCTGAAATTCTCAG
TTGTCACGGAAAAAACTGTTTTTTCCACTCCAGAAGCAAGTATTGGGTTT
CATACTGATTGTGGTTTCTCATTCATCCATTCTCGTCTCCCTGGACATTT
AGGGGAATTCCTGGCCTTAACT
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