FC921714

Overview
NameFC921714
Unique NameFC921714
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD_BOVIN (Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/139 (33.09%), Postives = 68/139 (48.92%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ + V F  Y + G LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  G   N+ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTYIWVLF--YYLMGALGITAGAHRLWSHRTYKARLPLRVFLIIGNTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLNLSDLRAEKLVMFQRRYY 218          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD1_MOUSE (Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.291e-14
Identity = 46/144 (31.94%), Postives = 72/144 (50.00%), Query Frame = 3
Query:  240 VVLAMHLLALFA----PFCFTWSSLRVAFGL-YVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +++ +HL  L+     P C  ++ L   FG+ Y +T  LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   74 LMVLLHLGGLYGIILVPSCKLYTCL---FGIFYYMTSALGITAGAHRLWSHRTYKARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 214          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD_SHEEP (Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 46/139 (33.09%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ L V F  Y V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYVISALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY 218          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD2_MOUSE (Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 46/139 (33.09%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   81 LHLGALYGITLVPSCKLYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACO11_TRINI (Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni GN=D11DS PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.875e-14
Identity = 46/143 (32.17%), Postives = 75/143 (52.45%), Query Frame = 3
Query:  255 HLLALFAPF-CFT---WSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTYILPSI 668
            HL AL+  + CFT   W +L  +F L+ ++ + GIT   HR  +H++FK    LE +       + Q   I W   HR HH++ D++ DPH+   GF++SH+ WL   K   + + G   ++ D+   P  +F +  Y +P I
Sbjct:   48 HLAALYGLYLCFTSAKWETLLFSFVLFHMSNI-GITAGAHRLWTHKTFKAKLPLEIVLMIFNSLAFQNTAITWAREHRLHHKYSDTDADPHNASRGFFYSHVGWLLVKKHPDVLKYGKTIDMSDVYNNPVLKF-QKKYAVPLI 188          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD2_RAT (Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.755e-14
Identity = 45/139 (32.37%), Postives = 67/139 (48.20%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +H+ AL+     P C  ++ L     LY V   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  GG  ++ DL+ +    F R  Y
Sbjct:   81 LHIGALYGITLVPSCKVYTCLFAY--LYYVISALGITAGAHRLWSHRTYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGKLDMSDLKAEKLVMFQRRYY 217          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: SCD5_BOVIN (Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 47/137 (34.31%), Postives = 67/137 (48.91%), Query Frame = 3
Query:  249 AMHLLALFAPFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLFDKD--SVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            A  L  L+A FCF  ++L             G+T   HR  SHRS+K    L    A     + Q +  +W   HR HH++ +++ DPH+   GF+FSH+ WLF +    V+E+ G   +V DL   P  RF R  Y
Sbjct:   75 AQPLTLLWAYFCFLLTAL-------------GVTAGAHRLWSHRSYKAKLPLRIFLAAANSMAFQNDIFEWSRDHRVHHKYSETDADPHNARRGFFFSHIGWLFVRKHRDVIEK-GRKLDVTDLLADPVVRFQRKYY 197          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD_PIG (Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SCD PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.905e-14
Identity = 45/139 (32.37%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ L  AF  Y+++ + G+T   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   ++  GG  N+ DL+ +    F R  Y
Sbjct:   71 LHLGALYGIILIPTCKIYTLLW-AFAYYLLSAV-GVTAGAHRLWSHRTYKARLPLRVFLIIANTMAFQNDVYEWARDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVKEKGGLLNMSDLKAEKLVMFQRRYY 207          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD_CAPHI (Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.406e-14
Identity = 45/139 (32.37%), Postives = 66/139 (47.48%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ L V F  Y +   LGIT   HR  SHR++K    L          + Q +  +W   HR HH+F +++ DPH+   GF+FSH+ WL   K   +   G   ++ DL  +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKIYTFLWVLF--YYMMSALGITAGVHRLWSHRTYKARLPLRVFLIIANTMAFQNDVFEWSRDHRAHHKFSETDADPHNSRRGFFFSHVGWLLVRKHPAVREKGATLDLSDLRAEKLVMFQRRYY 218          
BLAST of FC921714 vs. ExPASy Swiss-Prot
Match: ACOD_HUMAN (Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 46/139 (33.09%), Postives = 65/139 (46.76%), Query Frame = 3
Query:  252 MHLLALFA----PFCFTWSSLRVAFGLYVVTGLLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQSLQGNPIDWVSTHRYHHQFCDSERDPHSPIEGFWFSHMSWLF-DKDSVLERCGGPNNVGDLEKQPFYRFLRSTY 653
            +HL AL+     P C  ++ L   F  Y     LGIT   HR  SHRS+K    L          + Q +  +W   HR HH+F ++  DPH+   GF+FSH+ WL   K   ++  G   ++ DLE +    F R  Y
Sbjct:   82 LHLGALYGITLIPTCKFYTWLWGVF--YYFVSALGITAGAHRLWSHRSYKARLPLRLFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEKGSTLDLSDLEAEKLVMFQRRYY 218          
The following BLAST results are available for this feature:
BLAST of FC921714 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACOD_BOVIN1.291e-1433.09Acyl-CoA desaturase OS=Bos taurus GN=SCD PE=2 SV=2[more]
ACOD1_MOUSE1.291e-1431.94Acyl-CoA desaturase 1 OS=Mus musculus GN=Scd1 PE=2... [more]
ACOD_SHEEP2.875e-1433.09Acyl-CoA desaturase OS=Ovis aries GN=SCD PE=2 SV=1[more]
ACOD2_MOUSE2.875e-1433.09Acyl-CoA desaturase 2 OS=Mus musculus GN=Scd2 PE=2... [more]
ACO11_TRINI2.875e-1432.17Acyl-CoA Delta(11) desaturase OS=Trichoplusia ni G... [more]
ACOD2_RAT3.755e-1432.37Acyl-CoA desaturase 2 OS=Rattus norvegicus GN=Scd2... [more]
SCD5_BOVIN4.905e-1434.31Stearoyl-CoA desaturase 5 OS=Bos taurus GN=SCD5 PE... [more]
ACOD_PIG4.905e-1432.37Acyl-CoA desaturase (Fragment) OS=Sus scrofa GN=SC... [more]
ACOD_CAPHI6.406e-1432.37Acyl-CoA desaturase OS=Capra hircus GN=SCD PE=2 SV... [more]
ACOD_HUMAN1.093e-1333.09Acyl-CoA desaturase OS=Homo sapiens GN=SCD PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32108E03EF RVDevelopN Citrus clementina cDNA clone C32108E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921714 ID=FC921714; Name=FC921714; organism=Citrus clementina; type=EST; length=710bp
ACAAGCTAATAAAAACGAGCTTTGTGTATCATGTTTATAAATATAACAAA
AGAGAGTCACTAGCAATTGTTAATGCAGCATCAATTGAATCGACAGAACC
AAAGCCAGAGCCAGAGCCAGAGCAAATTCCCGAAGTGGAAACTTATGGGA
GAATTTTGTTATCTGATGTGTTGGTGAAGAGGAGAAGAAGTTTATTTTCT
GGGAGGAATTGGAACTCATTGGATATAAGCACAGCTGGTGTTGTTTTGGC
AATGCATTTGCTTGCTCTCTTTGCGCCATTTTGTTTCACGTGGAGTTCTC
TTAGGGTTGCTTTTGGACTTTATGTTGTGACTGGACTTCTGGGTATCACT
CTTTCTTTTCACAGAAACCTTTCTCATAGGAGTTTTAAATTACCCAAATG
GCTTGAGTACTTGTTTGCTTATTGCGGAGTTCAGTCTCTTCAGGGGAATC
CAATTGATTGGGTAAGCACACATAGGTATCATCACCAGTTTTGTGATTCC
GAAAGGGATCCGCATAGTCCCATTGAAGGGTTTTGGTTTAGTCACATGAG
TTGGCTGTTTGATAAGGATTCTGTTCTCGAAAGGTGTGGAGGGCCCAACA
ATGTGGGAGATTTAGAGAAGCAGCCTTTCTATAGATTCTTAAGAAGCACT
TACATTCTCCCATCCATTGCACTTGGAGGCTTGCTATATGCACTGGGAGG
CTTTCCTTTC
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