FC923094

Overview
NameFC923094
Unique NameFC923094
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10680 contig Ccv1_Contig10680:109..843. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 6.489e-38
Identity = 82/209 (39.23%), Postives = 128/209 (61.24%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK---TFATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKRHAPL 719
            LS  FY+ SCP  ++IV+  + NA   D  +AA ++R+HFHDCFV GCD SVLL+ S + ++ + + + R  A  F  +D++++ +  EC   VSCAD+LAL ARDS+ + GGP++++ LGRRD++      ++ N+PSP S    IL  F  +  +  + VAL G HT+G + C  F  RLY        D TL++ +A+ L++  P+
Sbjct:   41 LSPQFYENSCPNAQAIVQSYVANAYFNDPRMAASILRLHFHDCFVNGCDASVLLDSSGTMESEKRSNANRDSARGFEVIDEIKSALENECPETVSCADLLALVARDSIVICGGPSWEVYLGRRDAREASLIGSMENIPSPESTLQTILTMFNFQGLDLTDLVALLGSHTIGNSRCIGFRQRLYNHTGNNDPDQTLNQDYASMLQQGCPI 249          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PERP7_BRARA (Peroxidase P7 OS=Brassica rapa PE=1 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 82/204 (40.20%), Postives = 126/204 (61.76%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVV---NLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKRHAP 716
            L+  FY  SCP L S V+  +++A+     + A ++R+ FHDCFV GCDGS+LL+ ++S   EQNA PN +  +     ++D+++ V K C  VVSCADILA+AARDSV   GGPN+++ +GRRD+KT +      N+P+P  + + +++ F     + R+ VALSG HT+G + C  F  R+Y   +  ++  FA   +R  P
Sbjct:    2 LTTNFYSTSCPNLLSTVKSGVKSAVSSQPRMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEQNAGPNRNSAR-GFTVINDIKSAVEKACPGVVSCADILAIAARDSVVQLGGPNWNVKVGRRDAKTASQAAANSNIPAPSMSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCVNFRARVY--NETNINAAFATLRQRSCP 202          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 83/209 (39.71%), Postives = 123/209 (58.85%), Query Frame = 3
Query:  111 VAKGLSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKRHAP 716
            + +G    FY  +CP+ ESIV+  ++   + D  +A G++R+HFHDCFV GCDGS+L+EGS +E+ A PN +L+      ++D + ++   C  VVSCADILALAARDSV  + G  + +P GRRD +    A   +LP+ F +  +    F  K  N ++ VAL+G HT+G A C    +RL+        DP++D TF   L+   P
Sbjct:   28 LGQGTRVGFYSSTCPRAESIVQSTVRAHFQSDPTVAPGILRMHFHDCFVLGCDGSILIEGSDAERTAIPNRNLK--GFDVIEDAKTQIEAICPGVVSCADILALAARDSVVATRGLTWSVPTGRRDGRVSRAADAGDLPAFFDSVDIQKRKFLTKGLNTQDLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCP 234          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER67_ARATH (Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 86/206 (41.75%), Postives = 131/206 (63.59%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARP-NLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKT--FATVVN--LPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKRHAP 716
            L+  FY +SCP L  +VR+ ++ A+ ++  + A L+R+ FHDCFV GCDGS+LL+ + S   E+ + P N S+R    + +D ++ +V K C  +VSCADILA+ ARDSV L GGP + + LGRRDS T  FA   +  +P P +  + ++N F+ +  + R+ VALSG HT+G A C  F NR+Y   +  +D +FA + +R+ P
Sbjct:   21 LNRDFYKESCPSLFLVVRRVVKRAVAREPRMGASLLRLFFHDCFVNGCDGSLLLDDTPSFLGEKTSGPSNNSVR--GFEVIDKIKFKVEKMCPGIVSCADILAITARDSVLLLGGPGWSVKLGRRDSTTANFAAANSGVIPPPITTLSNLINRFKAQGLSTRDMVALSGAHTIGRAQCVTFRNRIYNASN--IDTSFAISKRRNCP 222          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER57_ARATH (Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 81/196 (41.33%), Postives = 120/196 (61.22%), Query Frame = 3
Query:  135 FYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATV-VNLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQ-----DPTLDKTFANNLK 704
            FY QSCP+ E+IVR  ++        + A L+R+HFHDCFV+GCD S+L++ + SE+ A PN S+R+     +D ++A++   C   VSCADI+ LA RDSVAL+GGP+Y +P GRRD +    + V LP P  + +  ++ F  K  N  + VAL G HTVG  +C  F++R+   Q     DP++D     +L+
Sbjct:   28 FYSQSCPQAETIVRNLVRQRFGVTPTVTAALLRMHFHDCFVKGCDASLLIDSTNSEKTAGPNGSVRE--FDLIDRIKAQLEAACPSTVSCADIVTLATRDSVALAGGPSYSIPTGRRDGRVSNNLDVTLPGPTISVSGAVSLFTNKGMNTFDAVALLGAHTVGQGNCGLFSDRITSFQGTGRPDPSMDPALVTSLR 221          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.475e-38
Identity = 90/210 (42.86%), Postives = 125/210 (59.52%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKRHAPL 719
            L+ TFYD SCP + +IVR  I N L+ D  + A ++R+HFHDCFV GCD S+LL+ +TS    +  L     A  F  VD ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS + F  +   NLP+PF     + + F +   +   + VALSGGHT G   C    +RLY        DPTL+ T+   L++  PL
Sbjct:   30 LTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNTTSFLTEKDALGNANSARGFPTVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDAFAKVGLDRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPL 239          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.446e-37
Identity = 89/210 (42.38%), Postives = 126/210 (60.00%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTS---EQNARPNLSLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDS-KTFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKRHAP 716
            L+ TFYD +CP + +IVR  I N L+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS   E++A PN +  +     +D ++A V   C R VSCADIL +AA+ +V L+GGP++ +PLGRRDS + F  +   NLP+PF     +   F+    +   + VALSGGHT G   C    +RLY        DPTL+ T+   L+   P
Sbjct:   31 LTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSAR-GFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNLAGGPSWRVPLGRRDSLQAFFALANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCP 239          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER1_WHEAT (Peroxidase OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.888e-37
Identity = 89/202 (44.06%), Postives = 123/202 (60.89%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNL-SLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVV---NLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKRHAP 716
            LS TFYD SCP+    ++  +  A+  D  + A L+R+HFHDCF  GCD SVLL G   EQNA PN+ SLR      +D+++ ++   C + VSCADIL +AARDSV   GGP++ +PLGRRDS T +  +   +LP P S+ + +   F +K  N  + VALSG HT+G A C  F  R+Y   D  ++  FA +LK + P
Sbjct:   25 LSSTFYDTSCPRALVAIKSGVAAAVSSDPRMGASLLRLHFHDCF--GCDASVLLTGM--EQNAGPNVGSLR--GFGVIDNIKTQLESVCKQTVSCADILTVAARDSVVALGGPSWTVPLGRRDSTTASASLANSDLPGPSSSRSQLEAAFLKKNLNTVDMVALSGAHTIGKAQCSNFRTRIY-GGDTNINTAFATSLKANCP 219          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER70_MAIZE (Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 88/205 (42.93%), Postives = 126/205 (61.46%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGS---TSEQNARPNL-SLRKEALKFVDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSKTFATVV---NLPSPFSNTTVILNDFREKTFNARETVALSGGHTVGLAHCPAFTNRLYPKQDPTLDKTFANNLKRHAP 716
            LS TFY +SCP+  + ++  +  A+ ++  + A L+R+HFHDCFVQGCDGSVLL  +   T EQ A PN+ S+R      VD+++A+V   C  VVSCADILA+AARDSV   GGP++ + LGRRDS T +  +   +LP+P  +   +   F +K  +  + VALSG HT+GLA C  F   +Y   D  ++  FA   + + P
Sbjct:   27 LSPTFYSRSCPRALATIKAAVTAAVAQEARMGASLLRLHFHDCFVQGCDGSVLLNDTATFTGEQTANPNVGSIR--GFGVVDNIKAQVEAVCPGVVSCADILAVAARDSVVALGGPSWRVLLGRRDSTTASLALANSDLPAPSLDLANLTAAFAKKRLSRTDLVALSGAHTIGLAQCKNFRAHIY--NDTNVNAAFATLRRANCP 227          
BLAST of FC923094 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 89/209 (42.58%), Postives = 122/209 (58.37%), Query Frame = 3
Query:  123 LSWTFYDQSCPKLESIVRKQIQNALKKDIGLAAGLIRIHFHDCFVQGCDGSVLLEGSTSEQNARPNLSLRKEALKF--VDDLRARVHKECGRVVSCADILALAARDSVALSGGPNYDLPLGRRDSK-TFATV--VNLPSPFSNTTVILNDFREKTFN-ARETVALSGGHTVGLAHCPAFTNRLY-----PKQDPTLDKTFANNLKRHAP 716
            L+ TFYD SCP + +IVR  I N L+ D  +AA ++R+HFHDCFV GCD S+LL+ +TS +  +        A  F  VD ++A V + C R VSCAD+L +AA+ SV L+GGP++ +PLGRRDS+  F  +   NLP+P      +   F     N   + VALSGGHT G   C    +RLY        DPTL+ T+   L++  P
Sbjct:   11 LTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVVDRIKAAVERACPRTVSCADVLTIAAQQSVNLAGGPSWRVPLGRRDSRQAFLDLANANLPAPSFTLPELKAAFANVGLNRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCP 219          
The following BLAST results are available for this feature:
BLAST of FC923094 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER36_ARATH6.489e-3839.23Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PERP7_BRARA8.475e-3840.20Peroxidase P7 OS=Brassica rapa PE=1 SV=3[more]
PERN1_TOBAC8.475e-3839.71Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER67_ARATH8.475e-3841.75Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=... [more]
PER57_ARATH8.475e-3841.33Peroxidase 57 OS=Arabidopsis thaliana GN=PER57 PE=... [more]
PER1B_ARMRU8.475e-3842.86Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER32_ARATH1.446e-3742.38Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER1_WHEAT1.888e-3744.06Peroxidase OS=Triticum aestivum PE=2 SV=1[more]
PER70_MAIZE2.466e-3742.93Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1[more]
PER1C_ARMRU2.466e-3742.58Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701A06EF StrClemenN Citrus clementina cDNA clone C31701A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923094 ID=FC923094; Name=FC923094; organism=Citrus clementina; type=EST; length=723bp
ACAAAGCGAGGTAATCAACAATGGCAACTGCTTCAGCTTCTTCTTTCATT
TCTCTTCTTTTGATATCTTCTCTTTTGCTTGCTTCTTTCACTGAGGCACA
AAAGCCCCCAGTAGCGAAAGGTCTCTCATGGACTTTTTATGACCAGAGCT
GTCCCAAGCTTGAATCCATTGTCAGAAAACAGATCCAAAATGCCCTGAAA
AAAGATATCGGCCTAGCTGCTGGCTTGATTCGCATCCATTTCCACGATTG
CTTCGTTCAGGGATGTGATGGATCAGTGTTGCTAGAGGGATCAACTAGTG
AGCAAAATGCACGTCCAAACCTAAGCTTAAGGAAGGAGGCTTTAAAATTT
GTAGACGATCTTCGTGCTCGTGTTCACAAGGAGTGTGGCAGAGTTGTTTC
TTGTGCTGATATTCTTGCCCTTGCTGCTCGCGATTCTGTTGCCTTGTCTG
GAGGGCCGAATTACGACCTACCATTGGGAAGGCGAGACAGCAAAACATTC
GCAACAGTGGTAAATCTGCCATCACCGTTCAGCAACACCACCGTGATCCT
CAACGATTTCCGAGAAAAAACCTTCAACGCCAGGGAAACCGTGGCCCTCT
CCGGCGGGCACACCGTTGGGCTAGCTCACTGCCCTGCATTCACCAATCGC
CTCTATCCCAAACAAGACCCCACACTGGACAAAACATTCGCCAACAATCT
CAAAAGACATGCCCCACTTCGGA
back to top