FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: DAZP1_MOUSE (DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 2.028e-27
Identity = 65/159 (40.88%), Postives = 91/159 (57.23%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                 S   K+ KIFVGGIP +  E E +++F +FG V E  ++ D    R RGFGFITF+ EQ+VD
Sbjct:   10 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168          

HSP 2 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 34/101 (33.66%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  158 EDDRSQPHTG-------DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            + +R++P  G       D +   KIF+GG+       +  ++F K+G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 191          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: DAZP1_XENLA (DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.459e-27
Identity = 65/164 (39.63%), Postives = 94/164 (57.32%), Query Frame = 2
Query:  191 GASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKG---------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            G   GK+F+GGL   T+      +F +YGE+ D VIMKD+ T Q RGFGFV + DP+ V  V+    H ++G+ ++ K   P+G                  +++ ++ KIFVGGIP +  E E K++F +FG V E  ++ D    R RGFGFITF+ EQ+VD
Sbjct:    6 GDEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169          

HSP 2 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 33/102 (32.35%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  158 EDDRSQPHTG--------DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPK 436
            + +RS+P  G        + +   KIF+GG+       +  ++F ++G +T+ V++ D +  +PRGFGF+T+ D   VD+ +    H I GK+VE+KR  P+
Sbjct:   91 QPERSRPREGWQQKEPRTENSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPR 192          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SQD_DROME (RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.901e-27
Identity = 64/176 (36.36%), Postives = 98/176 (55.68%), Query Frame = 2
Query:  119 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKV-IEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            ++ D   +   +   D     +G      K+F+GGL+ ET+  +   HFGKYGEI    +  D +TG+ RGF F+ + +   +DKV   D HIIN K+V+ K+   +           KIFVGG+ + ++++E K +F QFG + E ++  D   S+ +GF FITFD+EQ V DLL
Sbjct:   28 ENGDAGAAGSTNGSSDNQSAASGQRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHIINSKKVDPKKAKARHG---------KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL 194          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RB97D_DROME (Ribonucleoprotein RB97D OS=Drosophila melanogaster GN=Rb97D PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.707e-27
Identity = 69/196 (35.20%), Postives = 110/196 (56.12%), Query Frame = 2
Query:   77 EPMDPESNEGIV--DRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649
            EP+  ES + IV  DR+ +D+ +                      K+FIGGLA  T+       +G++G++ D V+M+D  T + RGFGF+TY    +VD+  E+  HII+GK VE KR +P+    S++     KK+FVGG+  + +E+  +++F+QFG V   +++ D +T + RGF F+ FD   AVD  + K
Sbjct:    5 EPLSDESADVIVLADREEDDICELEHLR-----------------KLFIGGLAPYTTEENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDRAQENRPHIIDGKTVEAKRALPRPERESRETNISVKKLFVGGLKDNHDEECLREYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK 183          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_SCHAM (Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog OS=Schistocerca americana GN=HNRNP PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 65/167 (38.92%), Postives = 94/167 (56.29%), Query Frame = 2
Query:  164 DRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            DR   H G+     K+FIGGL   T+     +HF ++GEI D V+MKD KT + RGFGF+TY+   +VD       H ++G+ VE KR +P+  +G  +     KK+FVGGI   + E++ +D+F Q+G V    I+ D  T + RGF F+ FD    VD +    N
Sbjct:    5 DRENDH-GEPEHVRKLFIGGLDYRTTDESLKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVDGRVVEPKRAVPRTEIGRPEAGATVKKLFVGGIKEEMEENDLRDYFKQYGTVVSAAIVVDKETRKKRGFAFVEFDDYDPVDKICLSRN 170          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RA1L2_HUMAN (Heterogeneous nuclear ribonucleoprotein A1-like protein 2 OS=Homo sapiens GN=HNRNPA1L2 PE=2 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.929e-26
Identity = 60/149 (40.27%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +  T H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO32_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.113e-25
Identity = 61/169 (36.09%), Postives = 94/169 (55.62%), Query Frame = 2
Query:  146 DHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            DH P  D       +     K+FIGGL+ ET+     +HF ++G++TD V+M+D +T + RGFGFVTY+    VD  +    H ++G+ VE KR + +   A        KKIFVGGI     E   +D+F  +G+++  ++M D  + + RGF F+TFD    VD ++
Sbjct:    8 DHWPSSDDQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_DROME (Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila melanogaster GN=Hrb98DE PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.453e-25
Identity = 62/178 (34.83%), Postives = 97/178 (54.49%), Query Frame = 2
Query:  119 DSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIED-THIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            +SN     + +  +DD  Q    +     K+FIGGL   T+      HF K+G I D V+MKD +T + RGFGF+TY+  S++D+  +   H I+G+ VE KR +P+  + S +     KK+FVG +    +E   +D+F  FG + +  I+ D  T + RGF F+ FD    VD ++
Sbjct:    3 NSNQNQNGNSNGHDDDFPQDSITEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDEAQKSRPHKIDGRVVEPKRAVPRQDIDSPNAGATVKKLFVGALKDDHDEQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVV 180          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_RAT (Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus GN=Hnrnpa1 PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_PANTR (Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes GN=HNRNPA1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
DAZP1_MOUSE2.028e-2740.88DAZ-associated protein 1 OS=Mus musculus GN=Dazap1... [more]
DAZP1_XENLA3.459e-2739.63DAZ-associated protein 1 OS=Xenopus laevis GN=daza... [more]
SQD_DROME5.901e-2736.36RNA-binding protein squid OS=Drosophila melanogast... [more]
RB97D_DROME7.707e-2735.20Ribonucleoprotein RB97D OS=Drosophila melanogaster... [more]
ROA1_SCHAM1.315e-2638.92Heterogeneous nuclear ribonucleoprotein A1, A2/B1 ... [more]
RA1L2_HUMAN2.929e-2640.27Heterogeneous nuclear ribonucleoprotein A1-like pr... [more]
RO32_XENLA1.113e-2536.09Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
ROA1_DROME1.453e-2534.83Heterogeneous nuclear ribonucleoprotein A1 OS=Dros... [more]
ROA1_RAT1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Ratt... [more]
ROA1_PANTR1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Pan ... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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