FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM24_DANRE (RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 37/97 (38.14%), Postives = 59/97 (60.82%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH-IINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIP 493
            KIF+GGL   T+ +   K+F  +GEI ++V++ DR+TG+ RG+GFVT AD S  D+  +D + II+G+    K  +    +G+K    +  F  G+P
Sbjct:   12 KIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAADRACKDPNPIIDGR----KANVNLAYLGAKPRVMQPGFTFGVP 104          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM19_HUMAN (Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 53/203 (26.11%), Postives = 95/203 (46.80%), Query Frame = 2
Query:   77 EPMDPES-NEGIVDRDSNDVHKSSDHHP---EDDRSQPHTGDGASPG-KIFIGGLARETSPAQFIKHFGKYGEITD-SVIMKDRKTGQ--PRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIKR---------TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHS-TSRSRGFGFITFDTEQ 625
            +P +PE+  +G    D N   + +D+     E++  +    + + PG  +FI  L  +T+  +  + F K G +   S+  K  K G     GFGFV Y  P    K ++    H+++G ++E++          T+ +     +   T KI V  IP   +  E ++ F  FGE++  ++ +  + T   RGFGF+ F T+Q
Sbjct:  683 DPAEPETVPDGETPEDENPTEEGADNSSAKMEEEEEEEEEEEESLPGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQAQKALKQLQGHVVDGHKLEVRISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQ 885          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 32/132 (24.24%), Postives = 67/132 (50.76%), Query Frame = 2
Query:  263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            F   GE+  + +++D+  G   G+GFV Y +    ++ I   + +NG +++ K   +      S+  K   +++ G+P ++ + + +D F+ FG +   +++ D +T  SRG  FI FD     ++ +   N
Sbjct:   40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAI---NTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM19_MOUSE (Probable RNA-binding protein 19 OS=Mus musculus GN=Rbm19 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 55/196 (28.06%), Postives = 87/196 (44.39%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDR-KTGQ--PRGFGFVTYADPSVVDKVIEDT--HIINGKQVEIK--RTIPKGAVGS-------KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHS-TSRSRGFGFITFDTEQ 625
            +DPE  +  V+       K  +   E++  +  +  G +   +FI  L   T+       F K G I    I K + K G     GFGFV Y  P    K ++    H ++G ++E++      K A+ S       K   T KI V  IP   N+ E ++ F  FGE++  ++ +  + T   RGFGF+ F T+Q
Sbjct:  685 LDPEGEKASVEGAEASTGKMEEEEEEEEEEEEESIPGCT---LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 877          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 44/170 (25.88%), Postives = 82/170 (48.24%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHI--INGKQVEIKRTIPKGAVGSK--------------DFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670
            ++I  L  E +  +F   FG++GEIT   ++KD+   +PRGFGFV YA+     K +++ +     GK++ + R   K     +               ++   +F+  +   V+++  K  F  FG +   +IM D    +S+GFGF+ + T +  +  + + N+  LA
Sbjct:  263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-KPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLA 430          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 43/161 (26.71%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667
            G +FI  L            F  +G I    + +D + G  +G+GFV Y      +  I+  +  ++N K+V +   I K    SK  + K     +++  + S +++DEF+  F +FGE+    + RD    +SRGFGF+ F T ++    + + N  E+
Sbjct:  142 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEI 300          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 40/171 (23.39%), Postives = 79/171 (46.20%), Query Frame = 2
Query:  146 DHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            DH  ED R     GD      + +  L +  +  +    F   GE+  + +++D+  G   G+GFV Y      ++ I   + +NG +++ K   +      S+  K   +++ G+P ++ + + +D F +FG +   +++ D +T  SRG  FI FD     ++ +   N
Sbjct:    7 DHMAEDCR-----GD-IGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI---NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN 168          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 42/174 (24.14%), Postives = 80/174 (45.98%), Query Frame = 2
Query:  134 HKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            H  +   P  + S   +G+  S   ++I GL   T+    IK    YG+I  +  + D+ T Q +G+GFV +  P+   K +      NG Q ++ +         ++     +++  +P S++E E ++    FG V   +I+RD +   SRG GF   ++ +  + ++   N
Sbjct:   33 HPMAPPSPSTNSSSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLK-ANGVQAQMAK--------QQEQDPTNLYISNLPISMDEQELENMLKPFGHVISTRILRD-ANGVSRGVGFARMESTEKCEVVIQHFN 196          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 38/150 (25.33%), Postives = 73/150 (48.67%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGA----VGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            G +FI  L R          F  +G I    +  D K G  +G+GFV +      +  I+  +  ++NGK+V + + IP+      +G K      ++V       ++++ K+FF  +G++  +++M      +S+GFGF+ F+T +A +
Sbjct:   90 GNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKED-GKSKGFGFVAFETTEAAE 237          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
RBM24_DANRE4.539e-1138.14RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=... [more]
RBM19_HUMAN4.539e-1126.11Probable RNA-binding protein 19 OS=Homo sapiens GN... [more]
ELV1B_XENLA4.539e-1124.24ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-... [more]
RBM19_MOUSE5.928e-1128.06Probable RNA-binding protein 19 OS=Mus musculus GN... [more]
PABP_SCHPO5.928e-1125.88Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC5.928e-1126.71Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV1_HUMAN5.928e-1123.39ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1... [more]
RBMS3_MOUSE7.743e-1124.14RNA-binding motif, single-stranded-interacting pro... [more]
PABP_DROME7.743e-1125.33Polyadenylate-binding protein OS=Drosophila melano... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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