FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25 Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ HF ++G +TD V+M+D T + RGFGFVTYA VD + H ++G+ VE KR + + KKIFVGGI E +D+F Q+G+++ +IM D + + RGF F+TFD +VD ++ Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25 Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2 Query: 155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 P R QP +G +G P K+FIGGL+ ET+ +HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + KKIFVGGI E +D+F ++G+++ ++M D + + RGF F+TFD VD ++ Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436 D PG KIF+GG+ +T +F KYG+I +M+DR++G+ RGF FVT+ D VDK V++ H ING E+K+ + K Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25 Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2 Query: 155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 P R QP +G +G P K+FIGGL+ ET+ +HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + KKIFVGGI E +D+F ++G+++ ++M D + + RGF F+TFD VD ++ Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436 D PG KIF+GG+ +T +F KYG+I +M+DR++G+ RGF FVT+ D VDK V++ H ING E+K+ + K Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25 Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2 Query: 155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 P R QP +G +G P K+FIGGL+ ET+ +HF K+G +TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + KKIFVGGI E +D+F ++G+++ ++M D + + RGF F+TFD VD ++ Sbjct: 5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184 HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12 Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2 Query: 188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436 D PG KIF+GG+ +T +F KYG+I +M+DR++G+ RGF FVT+ D VDK V++ H ING E+K+ + K Sbjct: 115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25 Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2 Query: 146 DHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 DH P D + K+FIGGL+ ET+ +HF ++G++TD V+M+D +T + RGFGFVTY+ VD + H ++G+ VE KR + + A KKIFVGGI E +D+ +G+++ ++M D + + RGF F+TFD VD ++ Sbjct: 8 DHWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_XENLA (Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25 Identity = 56/149 (37.58%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ +HF ++G +TD V+M+D + + RGFGFVTY VD + H ++G+ VE KR + + + KKIFVGGI ED +++F Q+G+++ +IM D + + RGF F+TF+ +VD ++ Sbjct: 15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |