FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_MOUSE (Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus GN=Hnrnpa1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_MACMU (Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta GN=HNRNPA1 PE=2 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_HUMAN (Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens GN=HNRNPA1 PE=1 SV=5)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_BOVIN (Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RA1L3_HUMAN (Putative heterogeneous nuclear ribonucleoprotein A1-like protein 3 OS=Homo sapiens GN=HNRPA1L3 PE=5 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.898e-25
Identity = 59/149 (39.60%), Postives = 87/149 (58.39%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+      HF ++G +TD V+M+D  T + RGFGFVTYA    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F Q+G+++  +IM D  + + RGF F+TFD   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_RAT (Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            P   R QP +G        +G  P       K+FIGGL+ ET+     +HF K+G +TD V+M+D +T + RGFGFVTY+    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F ++G+++  ++M D  + + RGF F+TFD    VD ++
Sbjct:    5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436
            D   PG      KIF+GG+  +T       +F KYG+I    +M+DR++G+ RGF FVT+ D   VDK V++  H ING   E+K+ + K
Sbjct:  115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_MOUSE (Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus GN=Hnrnpa3 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            P   R QP +G        +G  P       K+FIGGL+ ET+     +HF K+G +TD V+M+D +T + RGFGFVTY+    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F ++G+++  ++M D  + + RGF F+TFD    VD ++
Sbjct:    5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436
            D   PG      KIF+GG+  +T       +F KYG+I    +M+DR++G+ RGF FVT+ D   VDK V++  H ING   E+K+ + K
Sbjct:  115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA3_HUMAN (Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens GN=HNRNPA3 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.523e-25
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = 2
Query:  155 PEDDRSQPHTG--------DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVI-EDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            P   R QP +G        +G  P       K+FIGGL+ ET+     +HF K+G +TD V+M+D +T + RGFGFVTY+    VD  +    H ++G+ VE KR + +            KKIFVGGI     E   +D+F ++G+++  ++M D  + + RGF F+TFD    VD ++
Sbjct:    5 PPPGRPQPDSGRRRRRRGEEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184          

HSP 2 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 2
Query:  188 DGASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436
            D   PG      KIF+GG+  +T       +F KYG+I    +M+DR++G+ RGF FVT+ D   VDK V++  H ING   E+K+ + K
Sbjct:  115 DSVKPGAHLTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINGHNCEVKKALSK 204          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO31_XENLA (Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.213e-25
Identity = 60/169 (35.50%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  146 DHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVD-KVIEDTHIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            DH P  D       +     K+FIGGL+ ET+     +HF ++G++TD V+M+D +T + RGFGFVTY+    VD  +    H ++G+ VE KR + +   A        KKIFVGGI     E   +D+   +G+++  ++M D  + + RGF F+TFD    VD ++
Sbjct:    8 DHWPSSDDQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFVGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA1_XENLA (Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus laevis GN=hnrnpa1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.421e-25
Identity = 56/149 (37.58%), Postives = 89/149 (59.73%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+FIGGL+ ET+     +HF ++G +TD V+M+D  + + RGFGFVTY     VD  +    H ++G+ VE KR + +   +        KKIFVGGI     ED  +++F Q+G+++  +IM D  + + RGF F+TF+   +VD ++
Sbjct:   15 KLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ROA1_MOUSE1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Mus ... [more]
ROA1_MACMU1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Maca... [more]
ROA1_HUMAN1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Homo... [more]
ROA1_BOVIN1.898e-2539.60Heterogeneous nuclear ribonucleoprotein A1 OS=Bos ... [more]
RA1L3_HUMAN1.898e-2539.60Putative heterogeneous nuclear ribonucleoprotein A... [more]
ROA3_RAT5.523e-2535.56Heterogeneous nuclear ribonucleoprotein A3 OS=Ratt... [more]
ROA3_MOUSE5.523e-2535.56Heterogeneous nuclear ribonucleoprotein A3 OS=Mus ... [more]
ROA3_HUMAN5.523e-2535.56Heterogeneous nuclear ribonucleoprotein A3 OS=Homo... [more]
RO31_XENLA7.213e-2535.50Heterogeneous nuclear ribonucleoprotein A3 homolog... [more]
ROA1_XENLA9.421e-2537.58Heterogeneous nuclear ribonucleoproteins A1 homolo... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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