FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_MOUSE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus GN=Hnrnpa2b1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23 Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_HUMAN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens GN=HNRNPA2B1 PE=1 SV=2) HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23 Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_BOVIN (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus GN=HNRNPA2B1 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.360e-23 Identity = 54/149 (36.24%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_RAT (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus norvegicus GN=Hnrnpa2b1 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23 Identity = 54/148 (36.49%), Postives = 88/148 (59.46%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 640 K+FIGGL+ ET+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD + Sbjct: 22 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKI 169
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_HUMAN (Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens GN=HNRNPD PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.777e-23 Identity = 67/191 (35.08%), Postives = 105/191 (54.97%), Query Frame = 2 Query: 92 ESNEGIVDRDSNDVHK----SSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649 ES +D N+ + SS H E +Q K+FIGGL+ +T+ +F K+GE+ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FGEV+ ++ D+ T++ RGF FITF E+ V ++ K Sbjct: 62 ESEGAKIDASKNEEDEGHSNSSPRHSEAATAQ------REEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA2_SAGOE (Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus oedipus GN=HNRNPA2B1 PE=1 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23 Identity = 53/149 (35.57%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKD--FKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ +T+ ++ ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + G KK+FVGGI E +D+F ++G++ +I+ D + + RGFGF+TFD VD ++ Sbjct: 10 KLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRPD_RAT (Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus GN=Hnrnpd PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.320e-23 Identity = 62/178 (34.83%), Postives = 101/178 (56.74%), Query Frame = 2 Query: 128 DVHKSSDHHPEDDRSQPHTGDGASPG---KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXK 649 D K+ + + S HT + K+FIGGL+ +T+ +F K+G++ D + D TG+ RGFGFV + + VDKV++ H +NGK ++ KR A+ +K+ KKIFVGG+ E++ +++F FGEV+ ++ D+ T++ RGF FITF E+ V ++ K Sbjct: 67 DASKNEEDEGHSNSSPRHTEAATAQREEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRA---KAMKTKE-PVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNRDL_XENTR (Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus tropicalis GN=hnrpdl PE=2 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 3.958e-23 Identity = 58/148 (39.19%), Postives = 87/148 (58.78%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D VDKV+E H ++GK ++ KR K G + KK+FVGG+ E++ K +F FGE++ ++ D T+ RGF F+T+ E+ V LL Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLL 169
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNDLA_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis GN=hnrpdl-A PE=2 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.169e-23 Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 GK+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D VDKV+E + H ++GK ++ KR K G + KK+FVGG+ E++ K +F FGE++ ++ D T+ RGF F+T+ E+ V LL Sbjct: 26 GKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETNEHKLDGKLIDPKRA--KALKGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLL 169
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: HNDLB_XENLA (Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis GN=hnrpdl-B PE=2 SV=1) HSP 1 Score: 106.301 bits (264), Expect = 1.504e-22 Identity = 57/147 (38.78%), Postives = 86/147 (58.50%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE-DTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ +TS ++ ++GE+ D I D TG+ RGFGFV + D VDKV+E H ++GK ++ KR K G + KK+FVGG+ E++ K +F FGE++ ++ D T+ RGF F+T+ E+ V LL Sbjct: 35 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLETKEHKLDGKLIDPKRA--KALQGKE--PPKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLL 177 HSP 2 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 40/113 (35.40%), Postives = 59/113 (52.21%), Query Frame = 2 Query: 200 PGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQ 535 P K+F+GGL+ ET+ Q ++FG +GEI + + D KT + RGF FVTY D V K++E H I + EIK PK + K +K GG + +++ Q Sbjct: 118 PKKVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLESRFHQIGTGKCEIKAAQPKEVYRQQQQKQQKGGRGGTRGRGRGQGYSNYYDQ 230 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |