FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO22_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.964e-22 Identity = 52/149 (34.90%), Postives = 89/149 (59.73%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ + ++G++TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + A KK+FVGGI E +++F ++G+++ +I+ D + + RGFGF+TF+ VD ++ Sbjct: 10 KLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMSARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 HSP 2 Score: 69.3218 bits (168), Expect = 2.038e-11 Identity = 38/110 (34.55%), Postives = 61/110 (55.45%), Query Frame = 2 Query: 170 SQPHTGDG--------------ASPG------KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDK-VIEDTHIINGKQVEIKRTIPK 436 ++PHT DG A PG K+F+GG+ +T ++F +YG+I + I+ D+++G+ RGFGFVT+ D VDK V++ H ING E+++ + K Sbjct: 69 ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIVLQKYHTINGHNAEVRKALSK 178
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RO21_XENLA (Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus laevis PE=2 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.715e-22 Identity = 52/149 (34.90%), Postives = 87/149 (58.39%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+FIGGL+ ET+ ++ ++G +TD V+M+D + + RGFGFVT++ + VD + H I+G+ VE KR + + A KK+FVGGI E +++F ++G++ +I+ D + + RGF F+TFD VD ++ Sbjct: 10 KLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMATRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFVGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROA0_HUMAN (Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens GN=HNRNPA0 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21 Identity = 54/146 (36.99%), Postives = 84/146 (57.53%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDT-HIINGKQVEIKRTIPK--GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 K+FIGGL +TS + HF +G +TD V++ + +T + R FGFVTY++ D + + H ++G VE+KR + + A K KK+FVGG+ V E + + F QFG V++ +I+ D + + RGFGF+ F A D Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSREDSARPGAHAKVKKLFVGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAAD 153
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_RAT (ELAV-like protein 4 OS=Rattus norvegicus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17 Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 M+P+ + G SN ++ + P ++ T D S + + L + + +F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 1 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_MOUSE (ELAV-like protein 4 OS=Mus musculus GN=Elavl4 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17 Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 M+P+ + G SN ++ + P ++ T D S + + L + + +F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 13 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_HUMAN (ELAV-like protein 4 OS=Homo sapiens GN=ELAVL4 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.536e-17 Identity = 54/191 (28.27%), Postives = 93/191 (48.69%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 M+P+ + G SN ++ + P ++ T D S + + L + + +F FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 8 MEPQVSNGPTSNTSNGPSSNNRNCPSPMQTGATTDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_XENTR (TAR DNA-binding protein 43 OS=Xenopus tropicalis GN=tardbp PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16 Identity = 53/183 (28.96%), Postives = 91/183 (49.73%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKG 652 ++P+D++ + D +S KI + GL +T+ +F +GE+ + KD KTG +GFGFV +AD KV+ H+I+G+ + K +P + +++K+FVG ++ +E + FF Q+GEV + I + R F F+TF +Q +DL+ KG Sbjct: 77 NYPKDNKRKMDETDASSAVKIKRAVTKTSDLIVLGLPWKTTEQDLKDYFSTFGEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCK--LPNSKSPDEPMRSRKVFVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLCGEDLIIKG 252
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 7.994e-16 Identity = 46/153 (30.07%), Postives = 81/153 (52.94%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + +F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + ++V G+P ++++ E + F Q+G + +I+ D +T SRG GFI FD E+A+ L Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15 Identity = 43/152 (28.29%), Postives = 83/152 (54.61%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGA---VGSKDFKTK-KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+F+G L + + F G + + ++ +R+T + RGFGFVT + +K +E + + ++G+Q+ + + P+G+ DF+ +++VG +P V+ + F + G+V +++ D T RSRGFGF+T +E V+D + Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAI 207
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15 Identity = 47/153 (30.72%), Postives = 78/153 (50.98%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + +F FG GEI +++D+ TGQ G+GFV Y DP+ DK I + +NG +++ K + S + ++V +P ++N+ E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 32 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 181 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |