FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15 Identity = 51/189 (26.98%), Postives = 95/189 (50.26%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670 ++P+D++ + D +S K+ + GL +T+ ++F +GE+ + KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FVG + EDE ++FF Q+G+V + I + R F F+TF +Q +DL+ KG + ++ Sbjct: 76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGEDLIIKGISVHIS 258
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15 Identity = 51/189 (26.98%), Postives = 95/189 (50.26%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670 ++P+D++ + D +S K+ + GL +T+ ++F +GE+ + KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FVG + EDE ++FF Q+G+V + I + R F F+TF +Q +DL+ KG + ++ Sbjct: 76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGEDLIIKGISVHIS 258
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15 Identity = 51/197 (25.89%), Postives = 94/197 (47.72%), Query Frame = 2 Query: 71 NPEPMDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKT----KKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 N EP E+ E D +S + E D + + K+F+G L + + F + G + + ++ +R T Q RGFGFVT + +K +E + + +NG+ + + + +G + +T +I+VG IP +++ + F + G+V +++ D T RSRGFGF+T +E + D + Sbjct: 94 NFEPSGEETEEEGFVEAVGDAGESDE--VEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15 Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + +F FG G+I +++D+ TGQ G+GFV Y+DP+ DK I + +NG +++ K + S + ++V G+P ++++ E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15 Identity = 50/198 (25.25%), Postives = 96/198 (48.48%), Query Frame = 2 Query: 98 NEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGA-----------SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 640 ++ + + D ++ S E D S+ +GA K+F+G LA + + F + G + + ++ +R+T Q RGFGFVT + + +E + + +NG+ + + + P+G+ + + +++VG +P V+ + F + G+V E +++ D T RSRGFGF+T VD+L Sbjct: 104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD---VDEL 298
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15 Identity = 52/189 (27.51%), Postives = 93/189 (49.21%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670 ++P+D++ + D +S K+ + GL +T+ ++F +GE+ + KD KTG +GFGFV + D KV+ H+I+G+ + K K + + +++K+FVG + DE + FF Q+GEV + I + R F F+TF +Q +DL+ KG + ++ Sbjct: 76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLCGEDLIIKGISVHIS 258
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14 Identity = 52/186 (27.96%), Postives = 93/186 (50.00%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN-----------GKQVEIKRTIPKGAVGSKDFKTKK-----IFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNK 658 H + DR A +++ + +ETS +F + FGKYG+IT +V+ KD + G+ RGFGFV + D + K +++ + + K+ E + + K ++ K K +FV + S+++++ K+ F FG + ++MRD T SRGFGF+ F T + + + N+ Sbjct: 201 HVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQ 384
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14 Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHST-SRSRGFGFITFD----TEQAVDDL 640 S + + L + + +F FG GEI +++D+ TGQ G+GFV Y DP+ DK I + +NG +++ K + S + ++V +P ++N+ E + F Q+G + +I+ D T S SRG GFI FD E+A+ L Sbjct: 33 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGL 183
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14 Identity = 41/152 (26.97%), Postives = 82/152 (53.95%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKT----KKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+F+G L + + F + G + + ++ +R+T + RGFGFVT + DK +E + +NG+ + + + P+G+ + +T +I+VG IP +++ + F + G+V +++ D + RSRGFGF+T +E + + + Sbjct: 98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + + FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |