FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_PONAB (TAR DNA-binding protein 43 OS=Pongo abelii GN=TARDBP PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 51/189 (26.98%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670
            ++P+D++ +    D +S  K+           + GL  +T+     ++F  +GE+    + KD KTG  +GFGFV + +     KV+   H+I+G+  + K    K +   +  +++K+FVG     + EDE ++FF Q+G+V +  I +       R F F+TF  +Q       +DL+ KG  + ++
Sbjct:   76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGEDLIIKGISVHIS 258          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_HUMAN (TAR DNA-binding protein 43 OS=Homo sapiens GN=TARDBP PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.781e-15
Identity = 51/189 (26.98%), Postives = 95/189 (50.26%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670
            ++P+D++ +    D +S  K+           + GL  +T+     ++F  +GE+    + KD KTG  +GFGFV + +     KV+   H+I+G+  + K    K +   +  +++K+FVG     + EDE ++FF Q+G+V +  I +       R F F+TF  +Q       +DL+ KG  + ++
Sbjct:   76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-QDEPLRSRKVFVGRCTEDMTEDELREFFSQYGDVMDVFIPKPF-----RAFAFVTFADDQIAQSLCGEDLIIKGISVHIS 258          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 51/197 (25.89%), Postives = 94/197 (47.72%), Query Frame = 2
Query:   71 NPEPMDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKT----KKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            N EP   E+ E        D  +S +   E D  +    +     K+F+G L  +       + F + G +  + ++ +R T Q RGFGFVT +     +K +E  + + +NG+ + + +   +G    +  +T     +I+VG IP  +++   +  F + G+V   +++ D  T RSRGFGF+T  +E  + D +
Sbjct:   94 NFEPSGEETEEEGFVEAVGDAGESDE--VEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAI 288          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_HUMAN (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.326e-15
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +F   FG  G+I    +++D+ TGQ  G+GFV Y+DP+  DK I   + +NG +++ K   +      S   +   ++V G+P ++++ E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   37 SKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 50/198 (25.25%), Postives = 96/198 (48.48%), Query Frame = 2
Query:   98 NEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGA-----------SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 640
            ++ + + D ++   S     E D S+    +GA              K+F+G LA + +       F + G +  + ++ +R+T Q RGFGFVT +     +  +E  + + +NG+ + + +  P+G+   +  +      +++VG +P  V+    +  F + G+V E +++ D  T RSRGFGF+T      VD+L
Sbjct:  104 SQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSD---VDEL 298          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_CHICK (TAR DNA-binding protein 43 OS=Gallus gallus GN=TARDBP PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.181e-15
Identity = 52/189 (27.51%), Postives = 93/189 (49.21%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670
            ++P+D++ +    D +S  K+           + GL  +T+     ++F  +GE+    + KD KTG  +GFGFV + D     KV+   H+I+G+  + K    K +   +  +++K+FVG     +  DE + FF Q+GEV +  I +       R F F+TF  +Q       +DL+ KG  + ++
Sbjct:   76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDIKTGHSKGFGFVRFTDYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTADELQQFFAQYGEVVDVFIPKPF-----RAFAFVTFADDQVAQSLCGEDLIIKGISVHIS 258          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASHGO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya gossypii GN=PAB1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 52/186 (27.96%), Postives = 93/186 (50.00%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN-----------GKQVEIKRTIPKGAVGSKDFKTKK-----IFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNK 658
            H  + DR        A    +++  + +ETS  +F + FGKYG+IT +V+ KD + G+ RGFGFV + D +   K +++ + +             K+ E  + + K    ++  K  K     +FV  +  S+++++ K+ F  FG +   ++MRD  T  SRGFGF+ F T +     + + N+
Sbjct:  201 HVSKKDRQSKLEEVKAKFTNVYVKNIDQETSQEEFEELFGKYGKITSAVLEKDSE-GKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQYEAARLEKLAKYQGVNLFVKNLDDSIDDEKLKEEFAPFGTITSAKVMRD-ETGNSRGFGFVCFSTPEEATKAITEKNQ 384          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV3_XENTR (ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl3 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKR-TIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHST-SRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +F   FG  GEI    +++D+ TGQ  G+GFV Y DP+  DK I   + +NG +++ K   +      S   +   ++V  +P ++N+ E +  F Q+G +   +I+ D  T S SRG GFI FD     E+A+  L
Sbjct:   33 SKTNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAI---NTLNGLKLQTKTIKVSYARPSSASIRDANLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGSVSRGVGFIRFDKRIEAEEAIKGL 183          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 41/152 (26.97%), Postives = 82/152 (53.95%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKGAVGSKDFKT----KKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+F+G L  +       + F + G +  + ++ +R+T + RGFGFVT +     DK +E    + +NG+ + + +  P+G+   +  +T     +I+VG IP  +++   +  F + G+V   +++ D  + RSRGFGF+T  +E  + + +
Sbjct:   98 KLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAI 249          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_XENTR (ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl2 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +    FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   65 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
TADBP_PONAB1.781e-1526.98TAR DNA-binding protein 43 OS=Pongo abelii GN=TARD... [more]
TADBP_HUMAN1.781e-1526.98TAR DNA-binding protein 43 OS=Homo sapiens GN=TARD... [more]
ROC4_NICSY2.326e-1525.8931 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV3_HUMAN2.326e-1530.07ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=1... [more]
ROC3_ARATH3.967e-1525.2531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
TADBP_CHICK5.181e-1527.51TAR DNA-binding protein 43 OS=Gallus gallus GN=TAR... [more]
PABP_ASHGO1.154e-1427.96Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV3_XENTR1.154e-1431.17ELAV-like protein 3 OS=Xenopus tropicalis GN=elavl... [more]
ROC3_NICSY1.969e-1426.9728 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELAV2_XENTR3.358e-1429.41ELAV-like protein 2 OS=Xenopus tropicalis GN=elavl... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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