FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + + FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + + FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14 Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + + FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14 Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 2 Query: 263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 FG GEI +++D+ TGQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14 Identity = 47/161 (29.19%), Postives = 85/161 (52.80%), Query Frame = 2 Query: 188 DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IINGKQVEIKRTIPKG---AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQ----AVDDL 640 D +S K+F+G + R + + +F ++G + + ++KD++TGQ +G FV YA D+ I H + G ++ G +G+ +F K+FVG + E E ++ F+QFG V++ +MRD +SRG GF+ + +++ A+D L Sbjct: 115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF---KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13 Identity = 49/189 (25.93%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670 ++P+D++ + D +S K+ + GL +T+ +F +GE+ + KD KTG +GFGFV + + KV+ H+I+G+ + K K + + +++K+FVG + +E + FF Q+GEV + I + R F F+TF ++ +DL+ KG + ++ Sbjct: 76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDKVAQSLCGEDLIIKGISVHIS 258
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13 Identity = 47/189 (24.87%), Postives = 92/189 (48.68%), Query Frame = 2 Query: 149 HHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQV------------------EIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNK 658 H P+ DR A+ I++ + ET+ +F + F +YGEI + + KD + G+P+GFGFV + D + K +E+ +NGK+ E+K+ + + F+ +F+ + S+++++ K+ F +G + ++MRD S+GFGF+ F + + + + N+ Sbjct: 213 HVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEE---LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQ 396
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13 Identity = 43/170 (25.29%), Postives = 86/170 (50.59%), Query Frame = 2 Query: 164 DRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHII---------------NGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQ 625 DR++ +G S +++ L +E + + K FGKYG+I+ +V+MKD ++G R FGFV + P +E + I + ++ E++R + + + + +++ + SVN+++ K+ F ++G V ++M +S SRGFGF+ + + Sbjct: 212 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM-NSQGLSRGFGFVAYSNPE 379
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13 Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQV---EIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITF 613 +F L+ + P Q + +YGEIT+ IM D K G+ +GFGF + V+E+ + I +GK + ++ I + A F+TK +++ I S++ D+ ++ F QFG + +M+D + S+GFGF+ + Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13 Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 2 Query: 197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKT-GQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 S + + L + + + FG GEI +++D+ T GQ G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |