FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +    FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +    FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 45/153 (29.41%), Postives = 76/153 (49.67%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +    FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   37 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 2
Query:  263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            FG  GEI    +++D+ TGQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   59 FGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: FCA_ARATH (Flowering time control protein FCA OS=Arabidopsis thaliana GN=FCA PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 47/161 (29.19%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  188 DGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH---IINGKQVEIKRTIPKG---AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQ----AVDDL 640
            D +S  K+F+G + R  +  +   +F ++G + +  ++KD++TGQ +G  FV YA     D+ I   H    + G    ++     G    +G+ +F   K+FVG +     E E ++ F+QFG V++  +MRD    +SRG GF+ + +++    A+D L
Sbjct:  115 DRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYATSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEF---KLFVGSLNKQATEKEVEEIFLQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGL 271          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: TADBP_MOUSE (TAR DNA-binding protein 43 OS=Mus musculus GN=Tardbp PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.667e-13
Identity = 49/189 (25.93%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKI----------FIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAV-----DDLLXKGNKLELA 670
            ++P+D++ +    D +S  K+           + GL  +T+      +F  +GE+    + KD KTG  +GFGFV + +     KV+   H+I+G+  + K    K +   +  +++K+FVG     +  +E + FF Q+GEV +  I +       R F F+TF  ++       +DL+ KG  + ++
Sbjct:   76 NYPKDNKRKMDETDASSAVKVKRAVQKTSDLIVLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQS-PDEPLRSRKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF-----RAFAFVTFADDKVAQSLCGEDLIIKGISVHIS 258          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 47/189 (24.87%), Postives = 92/189 (48.68%), Query Frame = 2
Query:  149 HHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQV------------------EIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNK 658
            H P+ DR        A+   I++  +  ET+  +F + F +YGEI  + + KD + G+P+GFGFV + D +   K +E+   +NGK+                   E+K+   +  +     F+   +F+  +  S+++++ K+ F  +G +   ++MRD     S+GFGF+ F + +     + + N+
Sbjct:  213 HVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAE-GKPKGFGFVNFVDHNAAAKAVEE---LNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQE-GNSKGFGFVCFSSPEEATKAMTEKNQ 396          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 43/170 (25.29%), Postives = 86/170 (50.59%), Query Frame = 2
Query:  164 DRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHII---------------NGKQVEIKRTIPKGAVGS-KDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQ 625
            DR++  +G   S   +++  L +E +  +  K FGKYG+I+ +V+MKD ++G  R FGFV +  P      +E  + I               + ++ E++R   +  +   +  +   +++  +  SVN+++ K+ F ++G V   ++M  +S   SRGFGF+ +   +
Sbjct:  212 DRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM-NSQGLSRGFGFVAYSNPE 379          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.850e-13
Identity = 42/144 (29.17%), Postives = 75/144 (52.08%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQV---EIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITF 613
            +F   L+ +  P Q  +   +YGEIT+  IM D K G+ +GFGF  +        V+E+ +  I +GK +     ++ I + A     F+TK     +++  I  S++ D+ ++ F QFG +    +M+D   + S+GFGF+ +
Sbjct:  190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCY 332          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.272e-13
Identity = 45/154 (29.22%), Postives = 76/154 (49.35%), Query Frame = 2
Query:  197 SPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKT-GQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            S   + +  L +  +  +    FG  GEI    +++D+ T GQ  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   64 SKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ELAV2_PONAB3.358e-1429.41ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE3.358e-1429.41ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN3.358e-1429.41ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
ELAV2_RAT4.386e-1432.82ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
FCA_ARATH9.772e-1429.19Flowering time control protein FCA OS=Arabidopsis ... [more]
TADBP_MOUSE1.667e-1325.93TAR DNA-binding protein 43 OS=Mus musculus GN=Tard... [more]
PABP_KLULA3.713e-1324.87Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP5_ARATH3.713e-1325.29Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PAP1A_DICDI4.850e-1329.17Polyadenylate-binding protein 1-A OS=Dictyostelium... [more]
ELAV2_XENLA8.272e-1329.22ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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