FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 47/168 (27.98%), Postives = 76/168 (45.24%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670 +F LA P + F G++ D ++ DR + + RG +V + D S V +V+ I+ Q E R + KG+ G +++VG + ++ ED + F FG ++ Q+M D T RS+G+GFITF + L + N ELA Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 55/220 (25.00%), Postives = 93/220 (42.27%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTG-----------------------------QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 M+P+ + G SN +S + P ++ T D S + + L + + +F FG GEI +++D+ TG Q G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 13 MEPQVSNGPTSNTSNGPSSNSRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12 Identity = 55/220 (25.00%), Postives = 93/220 (42.27%), Query Frame = 2 Query: 83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTG-----------------------------QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640 M+P+ + G SN +S + P ++ T D S + + L + + +F FG GEI +++D+ TG Q G+GFV Y DP +K I + +NG +++ K + S + ++V G+P ++ + E + F Q+G + +I+ D T SRG GFI FD E+A+ L Sbjct: 13 MEPQVSNGPTSNTSNGPSSNSRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12 Identity = 42/167 (25.15%), Postives = 86/167 (51.50%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK----------GAVGSKDF-KTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667 KIF+G L A + F + G + ++ D+ TG+ RGFGFVT + V+ + + + ++G+ + + P G+ G F + +++VG + V++D + F + G+V + +++ D + RSRGFGF+T+ + + V++ + + ++L Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 254
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12 Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITF----DTEQAVDDLLXK 649 G +FI L F +G I + +D + G +G+GFV Y + I+ + ++N K+V + IPK SK + K I+V I V +DEF+ F ++G+V + RD T +SRGFGF+ F D +AV +L K Sbjct: 149 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEK 306
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12 Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 2 Query: 182 TGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA---DPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTK------------KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 + DG ++++G + R + + ++G I + +M D+ +G+ R FGFVT D + V + + DT I K IK I + + D T K+++G + +V + KDFF + G+V ++ R TS+S GFGF++F +E+ V+ Sbjct: 77 SSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRK---IKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 239
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12 Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLXK 649 G IFI L F +G I + +D G +G+GFV Y + I+ + ++N K+V + IPK SK + K ++V I + V ++EF++ F +FGEV + RD +SRGFGF+ F T QAVD+L K Sbjct: 148 GNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGK 304
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12 Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670 +F LA P + F G++ D ++ DR + + +G +V + D S V +V+ I+ Q E R + KG+ G +++VG + ++ ED + F FG ++ Q+M D T RS+G+GFITF + L + N ELA Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12 Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670 +F LA P + F G++ D ++ DR + + +G +V + D S V +V+ I+ Q E R + KG+ G +++VG + ++ ED + F FG ++ Q+M D T RS+G+GFITF + L + N ELA Sbjct: 155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12 Identity = 50/207 (24.15%), Postives = 97/207 (46.86%), Query Frame = 2 Query: 101 EGIVDRDSNDVHKSSDHHPE-DDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK-RTIPKGAVGSKDFKTKKI--------------FVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667 E + + D +V S++ E +++ + + G++++G L + +Q + F + G + + I+ DR T + RGF FVT + I D + G+ V++ +P+G G ++ + KI +V + ++ +D F +++ D S+ RSRGFGFITF + +A++ L N++EL Sbjct: 79 EVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRG--GEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVEL 283 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |