FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_MOUSE (RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 47/168 (27.98%), Postives = 76/168 (45.24%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670
            +F   LA    P    + F   G++ D  ++ DR + + RG  +V + D S V         +V+    I+   Q E  R       + KG+ G       +++VG +  ++ ED  +  F  FG ++  Q+M D  T RS+G+GFITF   +     L + N  ELA
Sbjct:  155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSRGIAYVEFVDVSSVRLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 55/220 (25.00%), Postives = 93/220 (42.27%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTG-----------------------------QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            M+P+ + G     SN    +S + P   ++   T D  S   + +  L +  +  +F   FG  GEI    +++D+ TG                             Q  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   13 MEPQVSNGPTSNTSNGPSSNSRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.080e-12
Identity = 55/220 (25.00%), Postives = 93/220 (42.27%), Query Frame = 2
Query:   83 MDPESNEGIVDRDSNDVHKSSDHHPEDDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTG-----------------------------QPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRT-IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDL 640
            M+P+ + G     SN    +S + P   ++   T D  S   + +  L +  +  +F   FG  GEI    +++D+ TG                             Q  G+GFV Y DP   +K I   + +NG +++ K   +      S   +   ++V G+P ++ + E +  F Q+G +   +I+ D  T  SRG GFI FD     E+A+  L
Sbjct:   13 MEPQVSNGPTSNTSNGPSSNSRNCPSPMQTGAATDD--SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAI---NTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 42/167 (25.15%), Postives = 86/167 (51.50%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK----------GAVGSKDF-KTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667
            KIF+G L      A   + F + G +    ++ D+ TG+ RGFGFVT +    V+   +  + + ++G+ + +    P           G+ G   F  + +++VG +   V++D  +  F + G+V + +++ D  + RSRGFGF+T+ + + V++ +   + ++L
Sbjct:   88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 254          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.411e-12
Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITF----DTEQAVDDLLXK 649
            G +FI  L            F  +G I    + +D + G  +G+GFV Y       + I+  +  ++N K+V +   IPK    SK  + K     I+V  I   V +DEF+  F ++G+V    + RD  T +SRGFGF+ F    D  +AV +L  K
Sbjct:  149 GNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEK 306          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 46/166 (27.71%), Postives = 82/166 (49.40%), Query Frame = 2
Query:  182 TGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYA---DPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTK------------KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            + DG    ++++G + R  +  +      ++G I  + +M D+ +G+ R FGFVT     D + V + + DT I   K   IK  I +  +   D  T             K+++G +  +V  +  KDFF + G+V   ++ R   TS+S GFGF++F +E+ V+
Sbjct:   77 SSDGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRK---IKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVE 239          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.843e-12
Identity = 51/159 (32.08%), Postives = 76/159 (47.80%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLXK 649
            G IFI  L            F  +G I    + +D   G  +G+GFV Y       + I+  +  ++N K+V +   IPK    SK  + K     ++V  I + V ++EF++ F +FGEV    + RD    +SRGFGF+ F T     QAVD+L  K
Sbjct:  148 GNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGK 304          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_PONAB (RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670
            +F   LA    P    + F   G++ D  ++ DR + + +G  +V + D S V         +V+    I+   Q E  R       + KG+ G       +++VG +  ++ ED  +  F  FG ++  Q+M D  T RS+G+GFITF   +     L + N  ELA
Sbjct:  155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: RBM39_HUMAN (RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.407e-12
Identity = 46/168 (27.38%), Postives = 76/168 (45.24%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVV--------DKVIEDTHIINGKQVEIKRT------IPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLELA 670
            +F   LA    P    + F   G++ D  ++ DR + + +G  +V + D S V         +V+    I+   Q E  R       + KG+ G       +++VG +  ++ ED  +  F  FG ++  Q+M D  T RS+G+GFITF   +     L + N  ELA
Sbjct:  155 VFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIGLTGQRVLGVPIIVQASQAEKNRAAAMANNLQKGSAGPM-----RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA 317          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.143e-12
Identity = 50/207 (24.15%), Postives = 97/207 (46.86%), Query Frame = 2
Query:  101 EGIVDRDSNDVHKSSDHHPE-DDRSQPHTGDGASPGKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIK-RTIPKGAVGSKDFKTKKI--------------FVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667
            E + + D  +V  S++   E +++ +    +    G++++G L    + +Q  + F + G + +  I+ DR T + RGF FVT        + I   D   + G+ V++    +P+G  G ++  + KI              +V  +  ++     +D F         +++ D S+ RSRGFGFITF + +A++  L   N++EL
Sbjct:   79 EVVQEDDEEEVALSAEEEEEIEEKEERVESESVEGGRLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRG--GEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVEL 283          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
RBM39_MOUSE1.080e-1227.98RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE... [more]
ELAV4_XENTR1.080e-1225.00ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.080e-1225.00ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
ROC1_NICSY1.411e-1225.1529 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
PABP_MAGGR1.411e-1230.82Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RRP2_SPIOL1.843e-1227.7130S ribosomal protein 2, chloroplastic OS=Spinacia... [more]
PABP_NEUCR1.843e-1232.08Polyadenylate-binding protein, cytoplasmic and nuc... [more]
RBM39_PONAB2.407e-1227.38RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE... [more]
RBM39_HUMAN2.407e-1227.38RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE... [more]
ROC5_NICSY3.143e-1224.1533 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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