FC923099
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12 Identity = 42/173 (24.28%), Postives = 86/173 (49.71%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK----------------GAVGSKDF-KTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667 KIF+G L A + F + G + ++ D+ TG+ RGFGFVT + V+ + + + ++G+ + + P G+ G F + +++VG + V++D + F + G+V + +++ D + RSRGFGF+T+ + + V++ + + ++L Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 260
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12 Identity = 48/166 (28.92%), Postives = 76/166 (45.78%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTE-------QAVDDLLXKGNKL 661 G +FI L F +G I + +D + G +G+GFV Y I+ + ++N K+V + I K SK + K ++V I E+EF+D F +FGE+ + RD + +SRGFGF+ F + +A++D KG KL Sbjct: 143 GNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11 Identity = 43/171 (25.15%), Postives = 80/171 (46.78%), Query Frame = 2 Query: 206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK-----------------------GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643 K+F+G L AQ + F G + ++ D+ TG+ RGFGFVT + S V+ + + + ++G+ + + P G GS +++VG + V++ + F + G+V E +++ D + RS+GFGF+T+D+ Q V + + Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11 Identity = 44/168 (26.19%), Postives = 83/168 (49.40%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLXKGNKL 661 +++ LA T+ FG+YG+IT +V+MKD + G+ +GFGFV + + + +E + H + K+ + R K + F++ ++V + S+++++ K+ F FG V ++MRD S+G GF+ F T E+A + + K+ Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKM 382
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11 Identity = 31/131 (23.66%), Postives = 67/131 (51.15%), Query Frame = 2 Query: 263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655 F GE+ + +++D+ G G+GFV Y + ++ I + + + IK ++ + + S+ K +++ G+P ++ + + +D F+ FG + +++ D +T SRG FI FD ++ + N Sbjct: 40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPS--SESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11 Identity = 44/161 (27.33%), Postives = 76/161 (47.20%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667 G +FI L F +G I + +D + G +G+GFV Y + I+ + ++N K+V + I K SK + K +++ I V E+EF++ F +FGE+ + RD +SRGFGF+ F T ++ + + N+ E+ Sbjct: 137 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEI 295
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11 Identity = 39/157 (24.84%), Postives = 81/157 (51.59%), Query Frame = 2 Query: 203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEI----KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655 G +FI L + +HF +G+I S +M D + +G+ FV + + S D+ IE+ + ++ G +V + R + + SK + +++ ++++ KD F ++G+ ++M D S+ +S+GFGF++FD+ +A + + N Sbjct: 98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMN 251
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 +++GGL + S + F + G + ++ + KDR TGQ +G+GFV + D I+ ++I GK + + K + +K+ IF+G + ++E D F FG + Q +IMRD T S+G+ FI F + A D Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 +++GGL + S + F + G + ++ + KDR TGQ +G+GFV + D I+ ++I GK + + K + +K+ IF+G + ++E D F FG + Q +IMRD T S+G+ FI F + A D Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11 Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2 Query: 209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634 +++GGL + S + F + G + ++ + KDR TGQ +G+GFV + D I+ ++I GK + + K + +K+ IF+G + ++E D F FG + Q +IMRD T S+G+ FI F + A D Sbjct: 15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156 The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 109
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Sequences
The
following sequences are available for this feature:
EST sequence >FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bpback to top |