FC923099

Overview
NameFC923099
Unique NameFC923099
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14384 contig Ccv1_Contig14384:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 42/173 (24.28%), Postives = 86/173 (49.71%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK----------------GAVGSKDF-KTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667
            KIF+G L      A   + F + G +    ++ D+ TG+ RGFGFVT +    V+   +  + + ++G+ + +    P                 G+ G   F  + +++VG +   V++D  +  F + G+V + +++ D  + RSRGFGF+T+ + + V++ +   + ++L
Sbjct:   88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 260          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_COCIM (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Coccidioides immitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 48/166 (28.92%), Postives = 76/166 (45.78%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTE-------QAVDDLLXKGNKL 661
            G +FI  L            F  +G I    + +D + G  +G+GFV Y         I+  +  ++N K+V +   I K    SK  + K     ++V  I     E+EF+D F +FGE+    + RD  + +SRGFGF+ F +        +A++D   KG KL
Sbjct:  143 GNVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKL 307          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.195e-11
Identity = 43/171 (25.15%), Postives = 80/171 (46.78%), Query Frame = 2
Query:  206 KIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPK-----------------------GAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 643
            K+F+G L      AQ  + F   G +    ++ D+ TG+ RGFGFVT +  S V+   +  + + ++G+ + +    P                        G  GS      +++VG +   V++   +  F + G+V E +++ D  + RS+GFGF+T+D+ Q V + +
Sbjct:   92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAI 262          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.560e-11
Identity = 44/168 (26.19%), Postives = 83/168 (49.40%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIE--DTHIINGKQVEIKRTIPKG--------------AVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLXKGNKL 661
            +++  LA  T+       FG+YG+IT +V+MKD + G+ +GFGFV + +     + +E  + H  + K+  + R   K                  +  F++  ++V  +  S+++++ K+ F  FG V   ++MRD     S+G GF+ F T E+A + +     K+
Sbjct:  217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKM 382          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 31/131 (23.66%), Postives = 67/131 (51.15%), Query Frame = 2
Query:  263 FGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIINGKQVEIKRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            F   GE+  + +++D+  G   G+GFV Y +    ++ I   + +  +   IK ++ + +  S+  K   +++ G+P ++ + + +D F+ FG +   +++ D +T  SRG  FI FD     ++ +   N
Sbjct:   40 FSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVARPS--SESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFN 168          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PABP_ASPOR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus oryzae GN=pab1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 44/161 (27.33%), Postives = 76/161 (47.20%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEIKRTIPKGAVGSKDFKTK----KIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGNKLEL 667
            G +FI  L            F  +G I    + +D + G  +G+GFV Y      +  I+  +  ++N K+V +   I K    SK  + K     +++  I   V E+EF++ F +FGE+    + RD    +SRGFGF+ F T ++    + + N+ E+
Sbjct:  137 GNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVDEMNEKEI 295          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 39/157 (24.84%), Postives = 81/157 (51.59%), Query Frame = 2
Query:  203 GKIFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTH--IINGKQVEI----KRTIPKGAVGSKDFKTKKIFVGGIPSSVNEDEFKDFFMQFGEVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLXKGN 655
            G +FI  L +        +HF  +G+I  S +M D +    +G+ FV + + S  D+ IE+ +  ++ G +V +     R   +  + SK  +   +++      ++++  KD F ++G+    ++M D S+ +S+GFGF++FD+ +A    + + N
Sbjct:   98 GNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGS--KGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMN 251          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            +++GGL  + S     + F + G + ++ + KDR TGQ +G+GFV +      D  I+  ++I   GK + +     K +  +K+      IF+G +   ++E    D F  FG + Q  +IMRD  T  S+G+ FI F +  A D
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            +++GGL  + S     + F + G + ++ + KDR TGQ +G+GFV +      D  I+  ++I   GK + +     K +  +K+      IF+G +   ++E    D F  FG + Q  +IMRD  T  S+G+ FI F +  A D
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156          
BLAST of FC923099 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 44/146 (30.14%), Postives = 74/146 (50.68%), Query Frame = 2
Query:  209 IFIGGLARETSPAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDKVIEDTHIIN--GKQVEIKRTIPKGAVGSKDFKT-KKIFVGGIPSSVNEDEFKDFFMQFGEV-QEHQIMRDHSTSRSRGFGFITFDTEQAVD 634
            +++GGL  + S     + F + G + ++ + KDR TGQ +G+GFV +      D  I+  ++I   GK + +     K +  +K+      IF+G +   ++E    D F  FG + Q  +IMRD  T  S+G+ FI F +  A D
Sbjct:   15 VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN----KASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASD 156          
The following BLAST results are available for this feature:
BLAST of FC923099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
ROC1_NICPL7.003e-1224.2830 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
PABP_COCIM9.146e-1228.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ROC1_ARATH1.195e-1125.15Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
PABP2_ARATH1.560e-1126.19Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
ELAV1_XENTR2.661e-1123.66ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
PABP_ASPOR3.475e-1127.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PAB4L_HUMAN3.475e-1124.84Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
SF3B4_RAT4.539e-1130.14Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE4.539e-1130.14Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]
SF3B4_HUMAN4.539e-1130.14Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]

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Properties
Property NameValue
Genbank descriptionC31701A12EF StrClemenN Citrus clementina cDNA clone C31701A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923099 ID=FC923099; Name=FC923099; organism=Citrus clementina; type=EST; length=671bp
GCTCTTGCGATAACCTTCAAATAAAACTTCTCTGTCTTCTCCTTCTTCAC
CGCCGTTATAACGCCGCTTAAATCCAGAACCCATGGACCCAGAATCTAAT
GAAGGAATTGTTGACAGAGATTCTAACGATGTTCATAAATCGTCAGACCA
CCACCCAGAAGATGACAGGTCTCAGCCTCACACCGGTGACGGAGCCAGCC
CTGGAAAAATTTTTATTGGAGGTTTAGCTAGAGAGACGTCGCCAGCTCAA
TTTATCAAGCATTTCGGTAAATATGGTGAAATTACGGATTCTGTGATAAT
GAAGGACCGGAAAACAGGGCAGCCTCGTGGATTTGGCTTTGTTACTTATG
CTGATCCCTCTGTAGTTGATAAAGTCATTGAAGACACTCACATTATTAAT
GGGAAACAGGTGGAAATTAAGCGAACAATTCCAAAAGGGGCTGTTGGCTC
TAAGGATTTCAAGACGAAGAAGATTTTTGTAGGTGGAATTCCGTCATCAG
TGAATGAAGATGAATTTAAGGACTTCTTTATGCAATTTGGAGAGGTACAA
GAGCACCAAATCATGCGGGATCATTCTACCAGTCGATCTCGTGGTTTTGG
ATTTATCACTTTTGACACGGAGCAAGCAGTTGATGACCTTTTGGNCAAGG
GGAACAAGCTTGAGTTGGCTG
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