FC923105

Overview
NameFC923105
Unique NameFC923105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROM1 (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain NATL1A) GN=ndhN PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.385e-12
Identity = 45/141 (31.91%), Postives = 70/141 (49.65%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDY---RLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            ++ +D+E    +AI +P E                     SARGLGDP   LT+++ + P H+G Q + R     EV     +L  L    K LV+W++E +VLSKSEL  ++ L    P+++++ E G  R   W+P  E
Sbjct:    9 KFRTDLESFGCLAILSPLEGGAETRLLRRLRASGYQTQITSARGLGDPVVFLTQLHGIRPPHLGHQNVGRNGALGEVQQVIPQLNELLVEDKPLVLWLLEGQVLSKSELLAISNLCQKEPRIKIVIEMGGARSIKWQPLNE 149          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROMT (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain NATL2A) GN=ndhN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.313e-12
Identity = 45/141 (31.91%), Postives = 69/141 (48.94%), Query Frame = 3
Query:  252 RWLSDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDY---RLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQE 665
            ++ +D+E    +AI +P E                     SARGLGDP   LT+++ + P H+G Q + R     EV     +L  L    K LV+W++E +VLSKSEL  +  L    P+++++ E G  R   W+P  E
Sbjct:    9 KFRTDLESFGCLAILSPLEGGAETRLLRRLRASGYQTQVTSARGLGDPVVFLTQLHGIRPPHLGHQNVGRNGALGEVQQVIPQLNELLVEDKPLVLWLLEGQVLSKSELLAINNLCQKEPRIKIVIEMGGARSIKWQPLNE 149          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNS3 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain CC9311) GN=ndhN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 3
Query:  372 SARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKG---LVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            SARGLGDPE  L + + + P H+G Q + R     EV   +  L  S  G   +V+W++E +VLS+SEL  L  L    P+++V+ E G  R   W+P +E+
Sbjct:   49 SARGLGDPEVFLFQKHGIRPPHLGHQSVGRGAAVGEVQEVMPLLGESMLGTKPVVLWLLEGQVLSRSELSALCDLCRREPRLKVVVEMGGARSLRWQPLKEL 150          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROMS (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain AS9601) GN=ndhN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            +D++ +K +AI+ P E                     SARGLGDPE  L K++ V P H+G Q + R     EV   +         + K  ++W++E +VLS+SEL+ L  + T   K+ ++ E G  RK  WKP
Sbjct:   12 NDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRPPHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTNDNKLTIVVEMGGSRKLEWKP 147          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROM9 (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            +D++ +K +AI+ P E                     SARGLGDPE  L K++ V P H+G Q + R     EV   +         + K  ++W++E +VLS+SEL+ L  + T   K+ ++ E G  RK  WKP
Sbjct:   12 NDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRPPHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTNDNKLSIVVEMGGSRKLEWKP 147          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROM2 (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain MIT 9215) GN=ndhN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.184e-11
Identity = 44/136 (32.35%), Postives = 67/136 (49.26%), Query Frame = 3
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            +D++ +K +AI+ P E                     SARGLGDPE  L K++ V P H+G Q + R     EV   +         + K  ++W++E +VLS+SEL+ L  + T   K+ ++ E G  RK  WKP
Sbjct:   12 NDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRPPHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTNDNKLTIVVEMGGSRKLEWKP 147          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNSC (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain CC9605) GN=ndhN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 44/134 (32.84%), Postives = 64/134 (47.76%), Query Frame = 3
Query:  264 DVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDY---RLAALPPSAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            D+E +  +A+  P E                     SARGLGDPE  LT+ + + P H+G Q + R     EV     +L  L  S   + +W++E +VLS+SEL  L  L    P++R+I E G  R   W+P
Sbjct:   13 DLEANGCLAVQAPLEGGAETRLLRRLRGAGYSTRMTSARGLGDPEVFLTQKHGIRPPHLGHQSVGRGAAVGEVQEVAPQLGDLFESDAPVALWLLEGQVLSRSELLSLCDLCKREPRLRIIVEMGGARSLKWEP 146          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNR3 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain RCC307) GN=ndhN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 3
Query:  264 DVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP---SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKP 656
            D+E+ +A+A+Y P E                     SARGLGDPE  L  ++ V P H+G   + R     EV   +  L P   S   +V+W++E +VLS +E   L  L    P++ ++ E G  R   WKP
Sbjct:   13 DLERERALAVYAPLEGGAETRLLRRLRAAGYRTELTSARGLGDPEAFLLGLHGVRPPHLGHHCVGRDAAVGEVQLVMPQLGPALASGAPVVLWMLEGQVLSSAEQASLLALCEREPRLHMVLELGGSRSLRWKP 146          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROMP (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ndhN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.546e-11
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWK 653
            +D+ K+K +A++ P E                     SARGLGDPE  L K++ + P H+G Q I R     EV   +         + K  ++W++E +VLS+SEL+ L  + T   K++++ E G  RK  WK
Sbjct:   12 NDLNKNKCLAMFAPLEGGYETRLLRRMRAKGFKTYITSARGLGDPEVFLLKLHGIRPPHLGHQSIGRNGALGEVQQVIPQASELFNENDKDKLLWLLEGQVLSQSELESLIKICTSDNKLKIVVEMGGSRKLEWK 146          
BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_SYNS9 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain CC9902) GN=ndhN PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.498e-11
Identity = 42/138 (30.43%), Postives = 65/138 (47.10%), Query Frame = 3
Query:  264 DVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPPSAKG---LVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWKPXQEI 668
            D+E +  +A++ P E                     SARGLGDPE  LT+ + + P H+G   + R     EV   +  +     G   + +WI+E +VLS+SEL  L  L    P++R+I E G  R   W+P + +
Sbjct:   17 DLEANGCLAVHAPLEGGAETRLLRRLRGAGYRTRMTSARGLGDPEVFLTQKHGIRPPHLGHNCVGRGAAVGEVQQVVPLIGDLLDGDDSVALWILEGQVLSRSELLSLCDLCKREPRLRIIVEMGGARSLRWQPMKAL 154          
The following BLAST results are available for this feature:
BLAST of FC923105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NDHN_PROM12.385e-1231.91NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_PROMT5.313e-1231.91NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_SYNS36.939e-1238.24NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_PROMS1.184e-1132.35NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_PROM91.184e-1132.35NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_PROM21.184e-1132.35NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_SYNSC1.546e-1132.84NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_SYNR31.546e-1132.09NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]
NDHN_PROMP1.546e-1131.85NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]
NDHN_SYNS94.498e-1130.43NAD(P)H-quinone oxidoreductase subunit N OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC31701B06EF StrClemenN Citrus clementina cDNA clone C31701B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923105 ID=FC923105; Name=FC923105; organism=Citrus clementina; type=EST; length=669bp
GAAAGCAACACAAGCTTCAATTAAGCTAAAAGAAATAGATGGCTGCAGCA
CCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCCAACAGAAGCA
GCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGAAGGAGAAATG
GTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGGTAATAGTGGC
ATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAACCTGATCTGGG
GCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCCATTTATACAC
CACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCTCAGATACCTG
GGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTGATCCTGAAAC
TACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTAGGAAAGCAAC
CAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAGGCTTGCTGCA
TTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTGAAGCCAAGGT
TCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCTACACTCCGGC
CAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAAGTTCATGTGG
AAGCCTNCTCAAGAAATTG
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