FC923105

Overview
NameFC923105
Unique NameFC923105
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of FC923105 vs. ExPASy Swiss-Prot
Match: NDHN_PROM0 (NAD(P)H-quinone oxidoreductase subunit N OS=Prochlorococcus marinus (strain MIT 9301) GN=ndhN PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.874e-11
Identity = 43/135 (31.85%), Postives = 66/135 (48.89%), Query Frame = 3 
Query:  261 SDVEKHKAIAIYTPHEXXXXXXXXXXXXXXXXXXXDLSARGLGDPETTLTKVYPVCPAHVGKQPIARWYFPPEVDYRLAALPP----SAKGLVVWIIEAKVLSKSELQFLALLPTLRPKVRVIAECGNWRKFMWK 653
            +D++ +K +AI+ P E                     SARGLGDPE  L K++ V P H+G Q + R     EV   +         + K  ++W++E +VLS+SEL+ L  + T   K+ ++ E G  RK  WK
Sbjct:   12 NDLKTNKCLAIFAPLEGGYETRLLRRMRAKGFKTFITSARGLGDPEVFLLKLHGVRPPHLGHQSVGRNGALGEVQQVIPQASELFNENDKNKLLWLLEGQVLSQSELESLIEICTKDNKLTIVVEMGGSRKLEWK 146
The following BLAST results are available for this feature:
BLAST of FC923105 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NDHN_PROM05.874e-1131.85NAD(P)H-quinone oxidoreductase subunit N OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionC31701B06EF StrClemenN Citrus clementina cDNA clone C31701B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923105 ID=FC923105; Name=FC923105; organism=Citrus clementina; type=EST; length=669bp
GAAAGCAACACAAGCTTCAATTAAGCTAAAAGAAATAGATGGCTGCAGCA
CCTTGCTTGCACTATGGGACACCTGCCTCCATCAAAATCCAACAGAAGCA
GCAACCAACACGAAACTGGATGATGATGCAAGGATTGAGAAGGAGAAATG
GTAAGGCATCTAAAAGAGTTGGAGTGACCAATTGTAGTGGTAATAGTGGC
ATTGAAATAGGGGACTTCATTGGAGGGGATCTGCTAAAACCTGATCTGGG
GCGTTGGCTTTCAGATGTGGAGAAGCACAAAGCCATTGCCATTTATACAC
CACATGAGGGTGGATATGAGGGCCGTTATCTTAATCGTCTCAGATACCTG
GGCTACTACTTCCTTGACCTTAGTGCTCGCGGCCTTGGTGATCCTGAAAC
TACTCTCACTAAAGTTTACCCTGTTTGCCCTGCTCATGTAGGAAAGCAAC
CAATAGCTAGGTGGTATTTCCCACCTGAAGTCGATTACAGGCTTGCTGCA
TTGCCCCCAAGTGCAAAAGGGCTTGTAGTCTGGATAATTGAAGCCAAGGT
TCTGTCAAAGTCAGAGTTGCAGTTCCTTGCTTTGCTTCCTACACTCCGGC
CAAAAGTCAGAGTCATTGCAGAGTGTGGAAACTGGAGGAAGTTCATGTGG
AAGCCTNCTCAAGAAATTG
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