FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.587e-63
Identity = 119/204 (58.33%), Postives = 153/204 (75.00%), Query Frame = 2
Query:   35 LTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQ----RLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            L VA+K LN  GLQGHK+WLAEV FLG + HPN+VKL+GYC ED +    RLLVYE+M   SLE+HLF + S  LPW  R++I LGAA+GL +LH+     VIYRDFK+SN+LLD  +  KLSDFGLA++ P+   THV+T  +GT+GYAAPEYV TGHL  KSDVYSFGVVL E++TGRR++++N+P  E  L++W + +  D
Sbjct:  116 LVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSEDGETGIERLLVYEYMSNRSLEDHLFPRRSHTLPWKKRLEIMLGAAEGLTYLHD---LKVIYRDFKSSNVLLDDQFCPKLSDFGLAREGPDGDNTHVTTARVGTHGYAAPEYVQTGHLRLKSDVYSFGVVLYEIITGRRTIERNKPVAERRLLDWVKEYPAD 316          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1561_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.150e-52
Identity = 107/207 (51.69%), Postives = 141/207 (68.12%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  PV  G    G  VAVK L+ G  QG  +++AE+  + ++LH NLVKL G C E + R+LVYE++P GSL+  LF   +L L WS R +I LG A+GL +LHEEA   +++RD K SNILLD+    ++SDFGLAK   +D KTH+STRV GT GY APEY M GHLT K+DVY+FGVV LE+++GR + D+N    +  L+EWA
Sbjct:  704 GFGPVYKGNLNDGRVVAVKLLSVGSRQGKGQFVAEIVAISSVLHRNLVKLYGCCFEGEHRMLVYEYLPNGSLDQALFGDKTLHLDWSTRYEICLGVARGLVYLHEEASVRIVHRDVKASNILLDSRLVPQISDFGLAK-LYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEEEKKYLLEWA 909          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 2.808e-52
Identity = 104/198 (52.53%), Postives = 139/198 (70.20%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRK-GSL-PLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWAR 619
            G  VAVK L +   Q  KE+  EV  +G + H NLV+L+GYC+E   R+LVY+F+  G+LE  +    G + PL W IRM I LG AKGLA+LHE  E  V++RD K+SNILLD  +NAK+SDFGLAK    +  ++V+TRVMGT+GY APEY  TG L  KSD+YSFG++++E++TGR  +D +RP GE NLV+W +
Sbjct:  176 GTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNLEQWIHGDVGDVSPLTWDIRMNIILGMAKGLAYLHEGLEPKVVHRDIKSSNILLDRQWNAKVSDFGLAKLLGSES-SYVTTRVMGTFGYVAPEYACTGMLNEKSDIYSFGILIMEIITGRNPVDYSRPQGETNLVDWLK 372          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5614_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g56140 OS=Arabidopsis thaliana GN=At1g56140 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.668e-52
Identity = 108/207 (52.17%), Postives = 141/207 (68.12%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  PV  G    G  VAVK L+ G  QG  +++AE+  +  + H NLVKL G C E + RLLVYE++P GSL+  LF + +L L WS R +I LG A+GL +LHEEA   +++RD K SNILLD+    K+SDFGLAK   +D KTH+STRV GT GY APEY M GHLT K+DVY+FGVV LE+++GR + D+N  + +  L+EWA
Sbjct:  703 GFGPVYKGKLNDGREVAVKLLSVGSRQGKGQFVAEIVAISAVQHRNLVKLYGCCYEGEHRLLVYEYLPNGSLDQALFGEKTLHLDWSTRYEICLGVARGLVYLHEEARLRIVHRDVKASNILLDSKLVPKVSDFGLAK-LYDDKKTHISTRVAGTIGYLAPEYAMRGHLTEKTDVYAFGVVALELVSGRPNSDENLEDEKRYLLEWA 908          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.034e-51
Identity = 105/198 (53.03%), Postives = 135/198 (68.18%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLEN--HLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWAR 619
            G  VAVK L +   Q  KE+  EV  +G++ H NLV+L+GYCIE   R+LVYE++  G+LE   H   +    L W  RMKI  G A+ LA+LHE  E  V++RD K SNIL+D ++NAKLSDFGLAK   + G++H++TRVMGT+GY APEY  TG L  KSD+YSFGV+LLE +TGR  +D  RP  E NLVEW +
Sbjct:  205 GTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNLEQWLHGAMRQHGNLTWEARMKIITGTAQALAYLHEAIEPKVVHRDIKASNILIDDEFNAKLSDFGLAK-LLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLK 401          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1534_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.012e-50
Identity = 103/208 (49.52%), Postives = 135/208 (64.90%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEW 613
            G  PV  G    G  +AVK L+ G  QG++E+L E+  +  L HPNLVKL G C+E  Q LLVYEF+   SL   LF  ++  L L W  R KI +G A+GLA+LHEE+   +++RD K +N+LLD   N K+SDFGLAK   ED  TH+STR+ GT+GY APEY M GHLT K+DVYSFG+V LE++ GR +  +   N    L++W
Sbjct:  634 GFGPVYKGKLFDGTIIAVKQLSTGSKQGNREFLNEIGMISALHHPNLVKLYGCCVEGGQLLLVYEFVENNSLARALFGPQETQLRLDWPTRRKICIGVARGLAYLHEESRLKIVHRDIKATNVLLDKQLNPKISDFGLAKLDEEDS-THISTRIAGTFGYMAPEYAMRGHLTDKADVYSFGIVALEIVHGRSNKIERSKNNTFYLIDW 840          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 9.988e-50
Identity = 107/210 (50.95%), Postives = 139/210 (66.19%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEH-NLVEWA 616
            G  PV  G    G+T+AVK L+    QG++E++ E+  +  L HPNLVKL G CIE  + LLVYE++   SL   LF   K  L L WS R KI +G AKGLA+LHEE+   +++RD K +N+LLD   NAK+SDFGLAK   +D  TH+STR+ GT GY APEY M G+LT K+DVYSFGVV LE+++G +S    RP  E   L++WA
Sbjct:  679 GFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKICIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAK-LNDDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSG-KSNTNYRPKEEFVYLLDWA 886          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 1.304e-49
Identity = 106/210 (50.48%), Postives = 139/210 (66.19%), Query Frame = 2
Query:    5 GTAPVKPGT---GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLF--RKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEH-NLVEWA 616
            G  PV  G    G+T+AVK L+    QG++E++ E+  +  L HPNLVKL G CIE  + LLVYE++   SL   LF   K  L L WS R K+ +G AKGLA+LHEE+   +++RD K +N+LLD   NAK+SDFGLAK   E+  TH+STR+ GT GY APEY M G+LT K+DVYSFGVV LE+++G +S    RP  E   L++WA
Sbjct:  677 GFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAK-LDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSG-KSNTNYRPKEEFIYLLDWA 884          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: Y1765_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07650 OS=Arabidopsis thaliana GN=At1g07650 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 100/198 (50.51%), Postives = 132/198 (66.67%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGS---LPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWA 616
            G  +AVK L+    QG++E++ E+  +  L HPNLVKL G C+E +Q +LVYE++    L   LF K     L L WS R KI LG AKGL FLHEE+   +++RD K SN+LLD D NAK+SDFGLAK   +DG TH+STR+ GT GY APEY M G+LT K+DVYSFGVV LE+++G+ + +         L++WA
Sbjct:  700 GKLIAVKQLSAKSRQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLILVYEYLENNCLSRALFGKDESSRLKLDWSTRKKIFLGIAKGLTFLHEESRIKIVHRDIKASNVLLDKDLNAKISDFGLAK-LNDDGNTHISTRIAGTIGYMAPEYAMRGYLTEKADVYSFGVVALEIVSGKSNTNFRPTEDFVYLLDWA 896          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: PTI1_SOLLC (Pto-interacting protein 1 OS=Solanum lycopersicum GN=PTI1 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 3.795e-49
Identity = 104/209 (49.76%), Postives = 143/209 (68.42%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFR----KGSLPLP---WSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGEHNLVEWARPHLXD 634
            +G   A+K L+    Q  +E+LA+V+ +  L   N+V+L+GYC++   R+L YE+ P GSL + L      KG+ P P   W+ R+KIA+GAAKGL +LHE+A+  +I+RD K+SNILL  D  AK++DF L+  AP+      STRV+GT+GY APEY MTG L+SKSDVYSFGVVLLE+LTGR+ +D   P G+ +LV WA P L +
Sbjct:   89 SGRAAAIKKLD-SSKQPDREFLAQVSMVSRLKDENVVELLGYCVDGGFRVLAYEYAPNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVGAAKGLEYLHEKAQPHIIHRDIKSSNILLFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLSSKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPRLSE 296          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y5707_ARATH1.587e-6358.33Probable receptor-like protein kinase At5g47070 OS... [more]
Y1561_ARATH2.150e-5251.69Probable LRR receptor-like serine/threonine-protei... [more]
Y1154_ARATH2.808e-5252.53Probable serine/threonine-protein kinase At1g01540... [more]
Y5614_ARATH3.668e-5252.17Probable LRR receptor-like serine/threonine-protei... [more]
Y2296_ARATH9.034e-5153.03Probable receptor-like protein kinase At2g42960 OS... [more]
Y1534_ARATH2.012e-5049.52Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH9.988e-5050.95Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH1.304e-4950.48Probable LRR receptor-like serine/threonine-protei... [more]
Y1765_ARATH3.795e-4950.51Probable LRR receptor-like serine/threonine-protei... [more]
PTI1_SOLLC3.795e-4949.76Pto-interacting protein 1 OS=Solanum lycopersicum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
back to top