FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MET_CANFA (Hepatocyte growth factor receptor OS=Canis familiaris GN=MET PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 58/175 (33.14%), Postives = 90/175 (51.43%), Query Frame = 2
Query:   44 AVKTLNHGGLQGH-KEWLAEVNFLGNLLHPNLVKLVGYCIEDD-QRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA--PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            AVK+LN     G   ++L E   + +  HPN++ L+G C+  +   L+V  +M  G L N +  +   P    + +   L  AKG+ +L   A K  ++RD    N +LD  +  K++DFGLA+D    E    H  T       + A E + T   T+KSDV+SFGV+L E++T
Sbjct: 1109 AVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDL-IGFGLQVAKGMKYL---ASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMT 1279          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHA3_RAT (Ephrin type-A receptor 3 OS=Rattus norvegicus GN=Epha3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 53/176 (30.11%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   35 LTVAVKTLNHGGLQGHK-EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTR-VMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            ++VA+KTL  G  +  + ++L E + +G   HPN+++L G   +    ++V E+M  GSL++ L RK          + +  G A G+ +L   ++   ++RD    NIL++++   K+SDFGL++   +D +   +TR       + +PE       TS SDV+S+G+VL E+++
Sbjct:  649 ISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL-RKHDAQFTVIQLVGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPVRWTSPEATAYRKFTSASDVWSYGIVLWEVMS 820          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHA3_CHICK (Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 52/176 (29.55%), Postives = 97/176 (55.11%), Query Frame = 2
Query:   35 LTVAVKTLNHGGLQGHK-EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTR-VMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            ++VA+KTL  G  +  + ++L E + +G   HPN+++L G   +    ++V E+M  GSL++ L RK          + +  G A G+ +L   ++   ++RD    NIL++++   K+SDFGL++   +D +   +TR       + +PE +     TS SD +S+G+VL E+++
Sbjct:  648 ISVAIKTLKAGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFL-RKHDAQFTVIQLVGMLRGIASGMKYL---SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDAWSYGIVLWEVMS 819          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: DLK1_CAEBR (Mitogen-activated protein kinase kinase kinase dlk-1 OS=Caenorhabditis briggsae GN=dlk-1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 62/174 (35.63%), Postives = 92/174 (52.87%), Query Frame = 2
Query:   38 TVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLP-WSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            TVAVK +N       KE   E+  L +L H N+++ +G C +     +V E+ P+G L   L +K  +    +S  +K     A G+ +LH+     VI+RD K+ NIL+ A+ + K+ DFG +    ++  T +S    GT  + APE +       K DVYSFGVVL EMLT
Sbjct:   85 TVAVKKVNQ-----LKE--TEIKHLRHLRHKNIIEFLGVCSKSPCYCIVMEYCPKGQLCTVLRQKNLITRQMFSDWVK---EIADGMHYLHQNK---VIHRDLKSPNILISAEDSIKICDFGTSHLQKKNDSTMMS--FCGTVSWMAPEMIKKEPCNEKVDVYSFGVVLWEMLT 243          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CDC5_YEAST (Cell cycle serine/threonine-protein kinase CDC5/MSD2 OS=Saccharomyces cerevisiae GN=CDC5 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 59/189 (31.22%), Postives = 98/189 (51.85%), Query Frame = 2
Query:   17 VKPGTGLTVAVKTLNHGGLQGHK---EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRL-LVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVM---TGHLTSKSDVYSFGVVLLEMLTGR 562
            +K  +G   A KT+    ++  K   + L+E+    ++ HPN+V+ +  C EDD  + ++ E  P GSL   L R+  L  P  +R          + ++H    + VI+RD K  NI  D++YN K+ DFGLA     + +   +  + GT  Y APE +M   +GH + + D++S GV+L  +L G+
Sbjct:   99 IKDDSGEIFAAKTVAKASIKSEKTRKKLLSEIQIHKSMSHPNIVQFID-CFEDDSNVYILLEICPNGSLMELLKRRKVLTEP-EVRF-FTTQICGAIKYMHS---RRVIHRDLKLGNIFFDSNYNLKIGDFGLAAVLANESERKYT--ICGTPNYIAPEVLMGKHSGH-SFEVDIWSLGVMLYALLIGK 278          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: TAOK3_HUMAN (Serine/threonine-protein kinase TAO3 OS=Homo sapiens GN=TAOK3 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 61/180 (33.89%), Postives = 88/180 (48.89%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEW---LAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMT---GHLTSKSDVYSFGVVLLEM 550
            T   VA+K +++ G Q H++W   L EV FL  L HPN ++  G  +++    LV E+   GS  + L      PL       I  GA  GLA+LH  A   +I+RD K  NILL      KL+DFG A  A        +   +GT  + APE ++    G    K D++S G+  +E+
Sbjct:   46 TSEVVAIKKMSYSGKQTHEKWQDILKEVKFLRQLKHPNTIEYKGCYLKEHTAWLVMEYC-LGSASD-LLEVHKKPLQEVEIAAITHGALHGLAYLHSHA---LIHRDIKAGNILLTEPGQVKLADFGSASMASP------ANSFVGTPYWMAPEVILAMDEGQYDGKVDIWSLGITCIEL 214          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: LYN_MOUSE (Tyrosine-protein kinase Lyn OS=Mus musculus GN=Lyn PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 60/187 (32.09%), Postives = 96/187 (51.34%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRK--GSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGE 595
            VAVKTL  G +   + +L E N +  L H  LV+L     +++   ++ EFM +GSL + L     G + LP  I     +  A+G+A++     K  I+RD + +N+L+      K++DFGLA+   ED +            + APE +  G  T KSDV+SFG++L E++T  +     R N +
Sbjct:  272 VAVKTLKPGTMSV-QAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLLPKLIDFSAQI--AEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLAR-VIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNAD 451          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: LIMK2_BOVIN (LIM domain kinase 2 OS=Bos taurus GN=LIMK2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 55/193 (28.50%), Postives = 96/193 (49.74%), Query Frame = 2
Query:   29 TGLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGK----THVSTR--------------VMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEML 553
            TG  + +  L     +  K +L EV  + +L HPN++K +G   +D +  L+ E++  G+L++  F +   P PW  +++ A G A G+A+LH      +I+RD  + N L+  D    ++DFGL++   E+ K       +T+              V+G   + APE +         DV+SFG+VL E++
Sbjct:  353 TGKVMVMNELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLTEYIEGGTLKD--FLRNVDPFPWQQKVRFAKGIASGMAYLHSMC---IIHRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKKPPVEKATTKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFGIVLCEII 540          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHB2_COTJA (Ephrin type-B receptor 2 OS=Coturnix coturnix japonica GN=EPHB2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 52/176 (29.55%), Postives = 94/176 (53.41%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHK-EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMG---TYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            VA+KTL  G  +  + ++L+E + +G   HPN++ L G   +    +++ EFM  GSL++ L R+          + +  G A G+ +L   A+   ++RD    N L++++   K+SDFGL++   +D      T  +G      + APE +     TS SDV+S+G+V+ E+++
Sbjct:  651 VAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSSPVMIITEFMENGSLDSFL-RQNDGQFTVIQLVGMLRGIAAGMKYL---ADMNYVHRDLAARNTLVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMS 822          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHB1_RAT (Ephrin type-B receptor 1 OS=Rattus norvegicus GN=Ephb1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 52/176 (29.55%), Postives = 96/176 (54.55%), Query Frame = 2
Query:   41 VAVKTLNHG-GLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMG---TYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            VA+KTL  G   +  +++L+E + +G   HPN+++L G   +    +++ EFM  G+L++ L R+          + +  G A G+ +L   +E   ++RD    NIL++++   K+SDFGL++   +D      T  +G      + APE +     TS SDV+S+G+V+ E+++
Sbjct:  648 VAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFL-RQNDGQFTVIQLVGMLRGIAAGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 819          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MET_CANFA2.745e-1533.14Hepatocyte growth factor receptor OS=Canis familia... [more]
EPHA3_RAT2.745e-1530.11Ephrin type-A receptor 3 OS=Rattus norvegicus GN=E... [more]
EPHA3_CHICK2.745e-1529.55Ephrin type-A receptor 3 OS=Gallus gallus GN=EPHA3... [more]
DLK1_CAEBR2.745e-1535.63Mitogen-activated protein kinase kinase kinase dlk... [more]
CDC5_YEAST2.745e-1531.22Cell cycle serine/threonine-protein kinase CDC5/MS... [more]
TAOK3_HUMAN3.585e-1533.89Serine/threonine-protein kinase TAO3 OS=Homo sapie... [more]
LYN_MOUSE3.585e-1532.09Tyrosine-protein kinase Lyn OS=Mus musculus GN=Lyn... [more]
LIMK2_BOVIN3.585e-1528.50LIM domain kinase 2 OS=Bos taurus GN=LIMK2 PE=2 SV... [more]
EPHB2_COTJA3.585e-1529.55Ephrin type-B receptor 2 OS=Coturnix coturnix japo... [more]
EPHB1_RAT3.585e-1529.55Ephrin type-B receptor 1 OS=Rattus norvegicus GN=E... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
back to top