FC923108

Overview
NameFC923108
Unique NameFC923108
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: EPHB1_MOUSE (Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 52/176 (29.55%), Postives = 96/176 (54.55%), Query Frame = 2
Query:   41 VAVKTLNHG-GLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMG---TYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLT 556
            VA+KTL  G   +  +++L+E + +G   HPN+++L G   +    +++ EFM  G+L++ L R+          + +  G A G+ +L   +E   ++RD    NIL++++   K+SDFGL++   +D      T  +G      + APE +     TS SDV+S+G+V+ E+++
Sbjct:  648 VAIKTLKAGYSEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSRPVMIITEFMENGALDSFL-RQNDGQFTVIQLVGMLRGIAAGMKYL---SEMNYVHRDLAARNILVNSNLVCKVSDFGLSRYLQDDTSDPTYTSSLGGKIPVRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS 819          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CSK_RAT (Tyrosine-protein kinase CSK OS=Rattus norvegicus GN=Csk PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRL-LVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA---PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEM 550
            G  VAVK + +      + +LAE + +  L H NLV+L+G  +E+   L +V E+M +GSL ++L  +G   L     +K +L   + + +L        ++RD    N+L+  D  AK+SDFGL K+A    + GK  V         + APE +     ++KSDV+SFG++L E+
Sbjct:  216 GNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREKKFSTKSDVWSFGILLWEI 379          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CSK_HUMAN (Tyrosine-protein kinase CSK OS=Homo sapiens GN=CSK PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.585e-15
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRL-LVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA---PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEM 550
            G  VAVK + +      + +LAE + +  L H NLV+L+G  +E+   L +V E+M +GSL ++L  +G   L     +K +L   + + +L        ++RD    N+L+  D  AK+SDFGL K+A    + GK  V         + APE +     ++KSDV+SFG++L E+
Sbjct:  216 GNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREKKFSTKSDVWSFGILLWEI 379          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: YSK4_HUMAN (SPS1/STE20-related protein kinase YSK4 OS=Homo sapiens GN=YSK4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 62/189 (32.80%), Postives = 96/189 (50.79%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLA---EVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVM----GTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGR---RSMDK 577
            VA+ T N   L   KE+     EV+ L  L H N+V  +G C++++   +  EF+P GS+ + + R G  PLP  +  K      +G+A+LHE     V++RD K +N++L      KL DFG A+     G     + ++    GT  + APE +       KSD++S G  + EM TG+    SMD+
Sbjct: 1091 VALDTSNK--LAAEKEYRKLQEEVDLLKALKHVNIVAYLGTCLQENTVSIFMEFVPGGSISSIINRFG--PLPEMVFCKYTKQILQGVAYLHENC---VVHRDIKGNNVMLMPTGIIKLIDFGCARRLAWAGLNGTHSDMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEMATGKPPLASMDR 1272          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: SNF1_CANTR (Carbon catabolite-derepressing protein kinase OS=Candida tropicalis GN=SNF1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 67/214 (31.31%), Postives = 106/214 (49.53%), Query Frame = 2
Query:   26 GTGLTVAVKTLNH-----GGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTS--KSDVYSFGVVLLEMLTGRRSMD--------KNRPNGEHNLVEWARP 622
            GTG  VA+K +N        +QG  E   E+++L  L HP+++KL       D+ ++V EF  +  L +++ ++G +P   + R    + AA      H+     +++RD K  N+LLD   N K++DFGL+    +      S    G+  YAAPE V++G L +  + DV+S GV+L  ML GR   D        K   NG + L  +  P
Sbjct:   73 GTGQKVALKIINRKTLAKSDMQGRVE--REISYLRLLRHPHIIKLYDVIKSKDEIIMVIEFAGK-ELFDYIVQRGKMPEDEARRFFQQIIAAVEYCHRHK-----IVHRDLKPENLLLDDQLNVKIADFGLSNIMTDGNFLKTS---CGSPNYAAPE-VISGKLYAGPEVDVWSSGVILYVMLCGRLPFDDEFIPALFKKISNGVYTLPNYLSP 274          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: ROCO9_DICDI (Probable serine/threonine-protein kinase roco9 OS=Dictyostelium discoideum GN=roco9 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   86 EWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDAD----YNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRR 565
            E+  E+  L + +H N++ L G+C+E     ++ EF   G+L +++    + PL W +R+KIA G A  L  LH+ +   V++RD K+ NILL +         L DF L+  +     T V+ R +    + APE +     + KSDVY++GV+L E+L+  R
Sbjct: 3052 EYRREIFCLSSFIHDNILDLKGFCLEP--LAIITEFQSGGNLYDYIHDLKN-PLDWQLRIKIAKGIAASLQTLHD-SRPSVVHRDLKSPNILLSSKDSLTMECHLCDFSLSGFS-----TTVANRSVQNPVWLAPEVINNELCSDKSDVYAYGVILFELLSRTR 3206          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: MATK_RAT (Megakaryocyte-associated tyrosine-protein kinase OS=Rattus norvegicus GN=Matk PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 57/160 (35.62%), Postives = 85/160 (53.12%), Query Frame = 2
Query:   89 WLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRS 568
            +L E   +  L H NLV+L+G  +      +V E + +G+L N L  +G   +  S  ++ AL  A+G+ +L     K +++RD    NIL+  D  AK+SDFGLAK     G       V  T    APE +  G  +SKSDV+SFGV+L E+ +  R+
Sbjct:  232 FLDETAVMTKLQHRNLVRLLGVILHHGL-YIVMEHVSKGNLVNFLRTRGRALVSTSQLLQFALHVAEGMEYLES---KKLVHRDLAARNILVSEDLVAKVSDFGLAKAELRKGLDSSRLPVKWT----APEALKNGRFSSKSDVWSFGVLLWEVFSYGRA 383          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: LYN_RAT (Tyrosine-protein kinase Lyn OS=Rattus norvegicus GN=Lyn PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 56/185 (30.27%), Postives = 93/185 (50.27%), Query Frame = 2
Query:   41 VAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDAPEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKNRPNGE 595
            VAVKTL  G +   + +L E N +  L H  LV+L     +++   ++ EFM +GSL + L       +     +  +   A+G+A++     K  I+RD + +N+L+      K++DFGLA+   ED +            + APE +  G  T KSDV+SFG++L E++T  +     R N +
Sbjct:  272 VAVKTLKPGTMSA-QAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGSKVLLPKLIDFSAQIAEGMAYIER---KNYIHRDLRAANVLVSESLMCKIADFGLAR-VIEDNEYTAREGAKFPIKWTAPEAINFGCFTIKSDVWSFGILLYEIVTYGKIPYPGRTNAD 451          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: CSK_MOUSE (Tyrosine-protein kinase CSK OS=Mus musculus GN=Csk PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.683e-15
Identity = 58/177 (32.77%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   32 GLTVAVKTLNHGGLQGHKEWLAEVNFLGNLLHPNLVKLVGYCIEDDQRL-LVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKDA---PEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEM 550
            G  VAVK + +      + +LAE + +  L H NLV+L+G  +E+   L +V E+M +GSL ++L  +G   L     +K +L   + + +L        ++RD    N+L+  D  AK+SDFGL K+A    + GK  V         + APE +     ++KSDV+SFG++L E+
Sbjct:  216 GNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVLEAMEYLEGNN---FVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVK--------WTAPEALREKKFSTKSDVWSFGILLWEI 379          
BLAST of FC923108 vs. ExPASy Swiss-Prot
Match: STE11_YEAS6 (Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=STE11 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 51/156 (32.69%), Postives = 84/156 (53.85%), Query Frame = 2
Query:   98 EVNFLGNLLHPNLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRKGSLPLPWSIRMKIALGAAKGLAFLHEEAEKPVIYRDFKTSNILLDADYNAKLSDFGLAKD-APEDGKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGR 562
            E+N L  L H N+V   G   E     +  E++P GS+ + L   G  P   S+          G+A+LH+   K +I+RD K +NIL+D     K++DFG++K  +P + K +    + G+  + +PE V     T+K+D++S G V++EM TG+
Sbjct:  504 EMNLLKELHHENIVTYYGASQEGGNLNIFLEYVPGGSVSSMLNNYG--PFEESLITNFTRQILIGVAYLHK---KKIIHRDIKGANILIDIKGCVKITDFGISKKLSPLNKKQNKRASLQGSVFWMSPEVVKQSATTAKADIWSTGCVVIEMFTGK 654          
The following BLAST results are available for this feature:
BLAST of FC923108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EPHB1_MOUSE3.585e-1529.55Ephrin type-B receptor 1 OS=Mus musculus GN=Ephb1 ... [more]
CSK_RAT3.585e-1532.77Tyrosine-protein kinase CSK OS=Rattus norvegicus G... [more]
CSK_HUMAN3.585e-1532.77Tyrosine-protein kinase CSK OS=Homo sapiens GN=CSK... [more]
YSK4_HUMAN4.683e-1532.80SPS1/STE20-related protein kinase YSK4 OS=Homo sap... [more]
SNF1_CANTR4.683e-1531.31Carbon catabolite-derepressing protein kinase OS=C... [more]
ROCO9_DICDI4.683e-1532.93Probable serine/threonine-protein kinase roco9 OS=... [more]
MATK_RAT4.683e-1535.63Megakaryocyte-associated tyrosine-protein kinase O... [more]
LYN_RAT4.683e-1530.27Tyrosine-protein kinase Lyn OS=Rattus norvegicus G... [more]
CSK_MOUSE4.683e-1532.77Tyrosine-protein kinase CSK OS=Mus musculus GN=Csk... [more]
STE11_YEAS66.116e-1532.69Serine/threonine-protein kinase STE11 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC31701B09EF StrClemenN Citrus clementina cDNA clone C31701B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923108 ID=FC923108; Name=FC923108; organism=Citrus clementina; type=EST; length=636bp
GAATGGAACTGCTCCAGTGAAACCCGGTACTGGGCTTACTGTTGCAGTTA
AAACCTTAAATCATGGTGGACTTCAGGGACATAAAGAGTGGCTGGCGGAA
GTTAATTTCCTTGGCAACCTCCTCCATCCCAATTTGGTTAAATTGGTTGG
ATACTGCATCGAAGATGATCAAAGGCTGCTGGTATATGAGTTTATGCCTC
GAGGGAGTTTGGAAAACCACCTCTTCAGAAAAGGGTCCTTGCCACTTCCA
TGGTCTATCAGAATGAAGATTGCACTTGGTGCTGCTAAGGGTCTTGCCTT
TCTTCATGAAGAAGCTGAAAAACCTGTGATATATCGTGATTTCAAAACAT
CAAATATTTTATTAGATGCGGATTACAATGCCAAACTCTCTGATTTTGGA
CTTGCCAAAGACGCCCCAGAGGATGGTAAAACACATGTATCTACTCGAGT
AATGGGAACGTATGGATATGCTGCTCCAGAGTATGTGATGACTGGACATT
TGACATCAAAGAGTGATGTCTATAGCTTTGGAGTAGTTTTACTTGAAATG
TTGACTGGACGAAGATCCATGGATAAAAACCGACCAAATGGGGAACACAA
CCTTGTGGAATGGGCAAGACCGCATCTTGNGGACAA
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