FC923109

Overview
NameFC923109
Unique NameFC923109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METS5 (Proteasome subunit alpha OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=psmA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.792e-32
Identity = 76/199 (38.19%), Postives = 122/199 (61.31%), Query Frame = 1
Query:   82 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            GYDR ITIFSP+G L+QV+YAF+AVK    T++GV+ K++V ++ +KK   +LLD   +  +F +  ++G    G  +D R L+  ARN + ++R  +   + +D L++ I+D  Q+YTQH  +RP GV  +V G+D     +L+  +P+G F  ++A + G     A ++LEK  K D   S EET+  A++AL+  L
Sbjct:    9 GYDRAITIFSPDGSLYQVDYAFEAVKK-GWTTLGVKTKNAVVILGEKKKASQLLDVDSIEKVFLLDDHVGCSFAGLASDGRILIDYARNSSLQHRLVYDEPISIDYLTKLISDVKQMYTQHGGVRPFGVALIVGGVDRGV-TKLFMTEPSGQFMPYQAVAIGQGGYNATDYLEKNYKED--LSVEETILLALNALKVTL 203          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.258e-32
Identity = 69/179 (38.55%), Postives = 109/179 (60.89%), Query Frame = 1
Query:   82 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKND 618
            GYDR IT+FSP+GRLFQVEYA +AVK    T++G++  D V ++  K++  +L++   +  +F I +++G   +G  ADARSLV +AR EA   R  +   + V+V+S+ I D  Q YTQ+  +RP G   ++ G+D+ K P+L++ DP+G    +KAT+ G      +   E   + D
Sbjct:    6 GYDRAITVFSPDGRLFQVEYAREAVKR-GTTAVGIKAADGVVLLVDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNK-PRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYRED 182          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METTH (Proteasome subunit alpha OS=Methanobacterium thermoautotrophicum GN=psmA PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 74/196 (37.76%), Postives = 120/196 (61.22%), Query Frame = 1
Query:   79 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSAL 666
            AGYDR IT+FSP+GRLFQVEYA +AVK    TS+GV+ K+ + +V  K+   KL++   +  +F I +++G   +G  ADAR+++ +AR EA   R  +   + V+ L++ I D  Q+YTQH  +RP G  A+++G    +G +L++ DP+G    +KAT+ G     A+   EKK  +D   +  + ++ A+ A+
Sbjct:    7 AGYDRAITVFSPDGRLFQVEYAREAVKR-GTTSLGVKSKEGIVLVVDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRVESLAKKICDMKQMYTQHGGVRPFG-TALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGRPAAMEEFEKKYSDD--MNLNQAIELALDAV 198          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.174e-32
Identity = 74/182 (40.66%), Postives = 113/182 (62.09%), Query Frame = 1
Query:   82 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTF 627
            GYDR IT+FSP+GRLFQVEYA +AVK  A T+IG++ K+ V ++  K+V  KLL+   +  ++ I +++    +G  ADAR L+ +AR EA   R  +   + V  L++ I D  Q YTQ+  +RP GV  ++ G+DE   P+LY+ DP+G    +KAT+ G+       F EK+ ++D +F
Sbjct:    7 GYDRAITVFSPDGRLFQVEYAREAVKRGA-TAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV--PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSF 185          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.068e-31
Identity = 76/200 (38.00%), Postives = 118/200 (59.00%), Query Frame = 1
Query:   79 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            AGYDR IT+FSP+GRLFQV YA +AVK  A T++GV+ K  V +  +K++  +L++ +    +F I  ++    +G  ADAR LV +AR EA  YR  +G  +P+ VL + I D  Q +TQ+  +RP G   ++ G++E+  P+LY+ DP+G +F  KA + G     A+   E+   +D     E  ++ A+ AL   L
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGA-TAVGVKWKGGVVLAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDD--IDMEGAIKLAILALAKTL 202          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_THEVO (Proteasome subunit alpha OS=Thermoplasma volcanium GN=psmA PE=3 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 80/206 (38.83%), Postives = 127/206 (61.65%), Query Frame = 1
Query:   61 MSRGSGAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            M +G  A YDR IT+FSP+GRLFQVEYA +AVK  + T++G++  + V +++ KK+  KL++Q  +  +  I  Y+  + +G  ADAR L+  AR  A + +  +G  + ++ L + +AD+ Q YTQ+  +RP GV  +  GID + GP+L+ CDPAG    +KAT+ G  +   ++FLEK+ K     S +E V   + AL++ L
Sbjct:    1 MQQGQMA-YDRAITVFSPDGRLFQVEYAREAVKKGS-TALGLKFSNGVLLISDKKIRSKLIEQNSLEKIQLIDDYVAAVTSGLVADARVLIDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGID-QIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEKEYKEG--LSEKEAVTLGIKALKASL 201          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 75/200 (37.50%), Postives = 118/200 (59.00%), Query Frame = 1
Query:   79 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            AGYDR IT+FSP+GRLFQV YA +AVK  A T++GV+ K+ V +  +K++  KL++ +    +F I  ++    +G  ADAR LV +AR EA  YR  +G  +P+ VL + I D  Q +TQ+  +RP G   ++ G++++  P+LY+ DP+G +F  +A + G     A+   E    +D     E  ++ A+ AL   L
Sbjct:    8 AGYDRAITVFSPDGRLFQVNYAREAVKRGA-TAVGVKWKEGVVLAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDD--LDMEGAIKLAILALAKTL 202          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.394e-31
Identity = 76/196 (38.78%), Postives = 116/196 (59.18%), Query Frame = 1
Query:   79 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSAL 666
            +GYDR ITIFSPEGRL+QVEYA +AV+    T++G++ KD V +   +++  KL+D + +  +F I  ++    +G  ADAR L+ +AR EA   R  +G  + V+ L++ I D  Q YTQH   RP G+  ++ GID     +L++ DP+G    +KAT+ G     A+  LE K   D T +  E ++ A+ AL
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRHSA-RLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSEDMTVN--EGMELALYAL 199          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_SULAC (Proteasome subunit alpha OS=Sulfolobus acidocaldarius GN=psmA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 77/207 (37.20%), Postives = 121/207 (58.45%), Query Frame = 1
Query:   61 MSRGSGA-GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            M+ G  A GYDR ITIFSP+G L+QV+YAF+AVK    T++GV+ K  V ++ +K+   +LLD   +  +F +  ++G    G  +D R L+  AR++A ++R  +   + ++ L++ I+D  Q YTQH  +RP GV  +V GID+ K P+L   +P+G F  + A + G     A  +LEK  K D     + T+  A+ AL + L
Sbjct:    1 MALGPAAMGYDRAITIFSPDGSLYQVDYAFEAVKR-GWTTLGVKTKSGVVLLAEKRKATQLLDVDGIEKIFMLDDHVGCTFAGLASDGRILIDYARSQALQHRLIYDEPISIEYLTKVISDVKQAYTQHGGVRPFGVALIVGGIDKGKQPKLLMTEPSGQFMPYYAVAIGQGGYTATEYLEKNYKED--LDIQSTILLALRALMATL 204          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.821e-31
Identity = 75/196 (38.27%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   79 AGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSAL 666
            +GYDR ITIFSPEGRL+QVEYA +AV+    T++G++ KD V +   +++  KL+D + +  +F I  ++    +G  ADAR L+ +AR EA   R  +G  + V+ L++ I D  Q YT H   RP G+  ++ GID     +L++ DP+G    +KAT+ G     A+  LE+K   D   S  E ++ A+ AL
Sbjct:    8 SGYDRAITIFSPEGRLYQVEYAREAVRR-GTTAVGIKCKDGVVLAVDRRITSKLIDVSSIEKIFQIDDHIVAATSGLVADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRHSA-RLFETDPSGALIEYKATAIGSGRPVAMEILEEKY--DENMSVSEGMELAIYAL 199          
The following BLAST results are available for this feature:
BLAST of FC923109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_METS54.792e-3238.19Proteasome subunit alpha OS=Metallosphaera sedula ... [more]
PSMA_METAC6.258e-3238.55Proteasome subunit alpha OS=Methanosarcina acetivo... [more]
PSMA_METTH8.174e-3237.76Proteasome subunit alpha OS=Methanobacterium therm... [more]
PSMA_ARCFU8.174e-3240.66Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_THEGJ1.068e-3138.00Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_THEVO1.394e-3138.83Proteasome subunit alpha OS=Thermoplasma volcanium... [more]
PSMA_THEON1.394e-3137.50Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METM51.394e-3138.78Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_SULAC1.821e-3137.20Proteasome subunit alpha OS=Sulfolobus acidocaldar... [more]
PSMA_METVS1.821e-3138.27Proteasome subunit alpha OS=Methanococcus vannieli... [more]

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Properties
Property NameValue
Genbank descriptionC31701B10EF StrClemenN Citrus clementina cDNA clone C31701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923109 ID=FC923109; Name=FC923109; organism=Citrus clementina; type=EST; length=678bp
GACTGAAGAAAAGTAAAAACACAAATCTGCAAATAGAAGAAAGAGAAAAA
AAAATCGAGAATGAGTAGAGGAAGCGGAGCCGGCTACGATCGCCACATCA
CCATCTTCTCTCCCGAGGGTCGTCTCTTCCAAGTTGAGTATGCGTTTAAG
GCTGTAAAGGCCACTGCCATCACTTCCATTGGTGTTCGCGGCAAGGACTC
TGTCTGTGTTGTCACTCAGAAGAAGGTCCCTGACAAGCTTTTGGATCAGA
CTTGTGTCACCCATCTTTTCCCTATTACCAAGTACCTTGGATTGTTGGCC
ACCGGCAACACAGCTGATGCTAGGTCCTTGGTTCACCAAGCAAGGAATGA
AGCTGCTGAATATCGGTTCAAATTTGGATATGAAATGCCAGTAGATGTTT
TGTCCAGATGGATTGCAGACAAGTCACAGGTTTATACCCAGCATGCTTAT
ATGAGACCTCTTGGAGTTGTTGCTATGGTTTTGGGTATCGATGAAGAGAA
AGGGCCTCAACTTTACAAATGTGATCCTGCTGGACATTTTTTTGGTCACA
AGGCAACGAGTGCTGGACTGAAAGAGCAAGAGGCAATCAATTTCTTGGAA
AAGAAAATGAAAAATGATCCTACCTTTTCTTATGAGGAAACAGTTCAGAC
TGCTGTCTCTGCTCTGCAATCTGTTCTC
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