FC923109

Overview
NameFC923109
Unique NameFC923109
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 65/183 (35.52%), Postives = 107/183 (58.47%), Query Frame = 1
Query:   82 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFS 630
            GYDR IT+FSP+GRL+QVEYA +AVK    T++G++  + V ++  K+V  +LL+   +  +F I  ++G+ ++G   DARSLV +AR E+   R  +   + V++L++ + D  Q YTQ    RP G   ++ G+ + +  +L++ DP+G    +KAT  G      I   E + + D  FS
Sbjct:    8 GYDRAITVFSPDGRLYQVEYAREAVKR-GTTAVGIKCSEGVVLIVDKRVTSRLLEPVSIEKIFKIDAHIGVASSGLVGDARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDGEA-RLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDADFS 188          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 72/198 (36.36%), Postives = 114/198 (57.58%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            YDR IT+FSP+G LFQVEYA +AVK  + T++GVRGKD V +  +KK   KL D+  V  +  +   + +   G TADAR ++++AR E   +R      + V+ ++R+IA   Q YTQ    RP G+ A+++G D +  P+LY+ DP+G +   KA + G   +      EK   ++   + + T++  + AL  V+
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGVRGKDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVV 199          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.884e-28
Identity = 74/200 (37.00%), Postives = 114/200 (57.00%), Query Frame = 1
Query:   76 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSV 675
            G GYD   + FSP+GR+FQ++YA KAV+ +  T IG+RGKD+V +  +K +  KL +      +F I K +G+   G  AD   +   AR EAA YR +F   +P+  L   +A     YT ++ +RP G+  ++   DE +GPQLYK +P+G  FG+ A ++G  +Q A   +E K+K D     +E V++A   +  V
Sbjct:    5 GTGYDLSASQFSPDGRVFQIDYASKAVEKSG-TVIGIRGKDAVVLAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEME-KLKMD--MRTDELVESAGEIIYKV 200          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA2_DICDI (Proteasome subunit alpha type-2 OS=Dictyostelium discoideum GN=psmA2 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.461e-28
Identity = 73/195 (37.44%), Postives = 118/195 (60.51%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQ 669
            Y   +T FSP G+L Q+E+A +A  A+  ++IG++ K+ V ++T+KK+   L+D T V  +  IT+ +GL+  G   D+R L+ +AR E+ +Y  ++  ++PV  L R +A   Q +TQ   +RP GV  +V G D EKGP LY+ DP+G +F  KAT+ G     +  FLEK+  +D     E+ +QTA+  ++
Sbjct:    5 YSFSLTTFSPSGKLVQIEHALQAA-ASGGSAIGIKAKNGVVLITEKKL-HSLVDVTSVQKISMITENIGLVYAGMGPDSRVLIKKARKESEKYYKQYKEKIPVLQLVRELASIMQEFTQSGGVRPFGVSLLVAGFD-EKGPHLYQVDPSGSYFAWKATAIGKNMVSSKTFLEKRYSDD--LEIEDAIQTALITIK 194          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.214e-28
Identity = 76/201 (37.81%), Postives = 112/201 (55.72%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQ-TCVTH-LFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATS-AGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            YD+  TIFSPEGR++QVEYA  A++    T +G+  KD + +  +KK   KLLD  T ++  +F I +++     G T+DA  L++ AR  +  + +++   MPV+ L   I D  Q YTQ+  +RP GV  +  G D   G QLY+ DP+G+F G KATS  G   Q A + L    K  P  S +E +Q A+  L   +
Sbjct:    5 YDQRTTIFSPEGRVYQVEYAMTAIRHAGAT-VGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYK--PDISLKEALQLALKVLTKTM 202          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.198e-28
Identity = 72/196 (36.73%), Postives = 109/196 (55.61%), Query Frame = 1
Query:   82 GYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQ 669
            GY   +T FSP G+L Q+EYA  AV A A  S+G++  + V + T+KK    L D+  V  + PITK++G++ +G   D R LV +AR  A +Y   +   +P   L + +A   Q YTQ   +RP GV  ++ G DE++ P L++ DP+G +F  KAT+ G        FLEK+   D     E+ + TA+  L+
Sbjct:    5 GYSFSLTTFSPSGKLVQIEYALAAVAAGA-PSVGIKASNGVVLATEKKQKSILYDEQSVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEDR-PYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNED--LELEDAIHTAILTLK 196          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 72/204 (35.29%), Postives = 116/204 (56.86%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGL------LATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            YDR IT+FSP+G LFQVEYA +AVK  + T++G+RG + V +  +KK   KL D+  V  +  +  ++ +      +  G TADAR ++++AR E   ++      + V+ ++R+IA   Q YTQ    RP G+ A+++G D++   +LY+ DP+G +   KA + G   +    FLEK    D   S  E ++ A+ AL  V+
Sbjct:    5 YDRAITVFSPDGHLFQVEYAQEAVKKGS-TAVGIRGTNIVVLGVEKKSVAKLQDERTVRKICALDDHVCMAFAVLTIFIGLTADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVV 207          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA5B_ARATH (Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.161e-28
Identity = 74/201 (36.82%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVY---TQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSALQSVL 678
            YDR +  FSPEGRLFQVEYA +A+K  + T+IGV+ K+ V +  +K++   LL+ + V  +  I  ++G   +G  ADAR+LV  AR E   +RF +G  M V+  ++ + D +  +    + +  RP GV  ++ G D E GP LY  DP+G F+   A + G   + A + L+++   D T    ET+  AVS L+ V+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGS-TAIGVKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLIAGHD-ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDITLQEAETI--AVSILKQVM 204          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA7_TRYBB (Proteasome subunit alpha type-7 OS=Trypanosoma brucei brucei GN=PSA4 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 69/194 (35.57%), Postives = 112/194 (57.73%), Query Frame = 1
Query:   85 YDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPTFSYEETVQTAVSAL 666
            YDR IT+FSP+G LFQVEYA +AV+   + ++GV+GKDS+    +KK   KL D      ++ + +++ L + G +ADAR +V+ A+ E   +R  +   + VD+L R++A   Q  TQ +  RP GV  ++ G +E   PQL+K +P+G      A + G  ++  + F+EK  ++  T   +  V  A+ AL
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVRK-GLCAVGVKGKDSIIFAVEKKSVQKLQDSRTTRKIYKLDEHIYLASAGLSADARVVVNHAQLECQRFRLSYEDAIDVDLLVRYVARVQQRSTQSSGSRPYGVSTIIGGFNENGQPQLWKTEPSGTSSAWNAAAIGRNDKVVLEFMEKNYQDGMT--RDRCVHFAIKAL 193          
BLAST of FC923109 vs. ExPASy Swiss-Prot
Match: PSA3_DICDI (Proteasome subunit alpha type-3 OS=Dictyostelium discoideum GN=psmA3 PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 9.352e-28
Identity = 67/176 (38.07%), Postives = 107/176 (60.80%), Query Frame = 1
Query:   76 GAGYDRHITIFSPEGRLFQVEYAFKAVKATAITSIGVRGKDSVCVVTQKKVPDKLLDQTCVTHLFPITKYLGLLATGNTADARSLVHQARNEAAEYRFKFGYEMPVDVLSRWIADKSQVYTQHAYMRPLGVVAMVLGIDEEKGPQLYKCDPAGHFFGHKATSAGLKEQEAINFLEK 603
            G+GYD +++ +SP+G+LFQV+YA KAV+ +  T + ++ KD V +  +K VP K+L       +  I  ++G+   G  ADAR L+ +AR+EA  Y+  +G  +P+ VLS+ IA  + ++T +  +RP G    + GID + GPQL+  +P+G   G+   S G  +Q A N LEK
Sbjct:    5 GSGYDLYVSTYSPDGKLFQVDYANKAVENSG-TLVAIKAKDGVVLGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPIPIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGID-QYGPQLFLVEPSGSCVGYFGASLGKGKQAAKNELEK 178          
The following BLAST results are available for this feature:
BLAST of FC923109 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
PSMA_METMJ1.884e-2835.52Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA7_CHICK1.884e-2836.36Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA3_DROME1.884e-2837.00Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA2_DICDI2.461e-2837.44Proteasome subunit alpha type-2 OS=Dictyostelium d... [more]
PSA4_DICDI3.214e-2837.81Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA2_CARAU4.198e-2836.73Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSA7L_HUMAN7.161e-2835.29Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA5B_ARATH7.161e-2836.82Proteasome subunit alpha type-5-B OS=Arabidopsis t... [more]
PSA7_TRYBB9.352e-2835.57Proteasome subunit alpha type-7 OS=Trypanosoma bru... [more]
PSA3_DICDI9.352e-2838.07Proteasome subunit alpha type-3 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionC31701B10EF StrClemenN Citrus clementina cDNA clone C31701B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923109 ID=FC923109; Name=FC923109; organism=Citrus clementina; type=EST; length=678bp
GACTGAAGAAAAGTAAAAACACAAATCTGCAAATAGAAGAAAGAGAAAAA
AAAATCGAGAATGAGTAGAGGAAGCGGAGCCGGCTACGATCGCCACATCA
CCATCTTCTCTCCCGAGGGTCGTCTCTTCCAAGTTGAGTATGCGTTTAAG
GCTGTAAAGGCCACTGCCATCACTTCCATTGGTGTTCGCGGCAAGGACTC
TGTCTGTGTTGTCACTCAGAAGAAGGTCCCTGACAAGCTTTTGGATCAGA
CTTGTGTCACCCATCTTTTCCCTATTACCAAGTACCTTGGATTGTTGGCC
ACCGGCAACACAGCTGATGCTAGGTCCTTGGTTCACCAAGCAAGGAATGA
AGCTGCTGAATATCGGTTCAAATTTGGATATGAAATGCCAGTAGATGTTT
TGTCCAGATGGATTGCAGACAAGTCACAGGTTTATACCCAGCATGCTTAT
ATGAGACCTCTTGGAGTTGTTGCTATGGTTTTGGGTATCGATGAAGAGAA
AGGGCCTCAACTTTACAAATGTGATCCTGCTGGACATTTTTTTGGTCACA
AGGCAACGAGTGCTGGACTGAAAGAGCAAGAGGCAATCAATTTCTTGGAA
AAGAAAATGAAAAATGATCCTACCTTTTCTTATGAGGAAACAGTTCAGAC
TGCTGTCTCTGCTCTGCAATCTGTTCTC
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