FC923112

Overview
NameFC923112
Unique NameFC923112
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length654
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig599 contig Ccv1_Contig599:22..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7A_ORYSI (Proteasome subunit alpha type-7-A OS=Oryza sativa subsp. indica GN=OsI_029135 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.308e-35
Identity = 80/179 (44.69%), Postives = 109/179 (60.89%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T  L +  S+ KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  +P+TVE  T+ +  L  ++    +    RPFG+S LI G D     P+LY TDPSGTF    A A G  S      L++ YK
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLGVEKKSTPKLQDSRSMRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTEKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYK 179          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSJ (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. japonica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.321e-35
Identity = 80/180 (44.44%), Postives = 110/180 (61.11%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T  L +  SV KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  + +TVE  T+ +  L  ++    +    RPFG+S LI G D   + P+LY TDPSGTF    A A G  S      L++ YK+
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE 180          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7B_ORYSI (Proteasome subunit alpha type-7-B OS=Oryza sativa subsp. indica GN=PAD1 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.321e-35
Identity = 80/180 (44.44%), Postives = 110/180 (61.11%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQ 620
            YDR +  FSP+G LFQVEYA+EA++ G+ A+G++  + VVL VEK+ T  L +  SV KI  +D HI  A +GL ADAR L+  ARVE Q+HR +  + +TVE  T+ +  L  ++    +    RPFG+S LI G D   + P+LY TDPSGTF    A A G  S      L++ YK+
Sbjct:    4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGSDTVVLGVEKKSTPKLQDSRSVRKIASLDTHIALACAGLKADARVLINRARVECQSHRLTVEDAVTVEYITRYIAGLQQKY---TQSGGVRPFGLSTLIVGFDPYTDKPALYQTDPSGTFSAWKANATGRNSNSMREFLEKNYKE 180          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_DICDI (Proteasome subunit alpha type-4 OS=Dictyostelium discoideum GN=psmA4 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 82/193 (42.49%), Postives = 119/193 (61.66%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSS--VEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDEN-GPSLYYTDPSGTFWQCNAKAI-GSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YD+    FSPEGR++QVEYA+ AI+     +G+  K+G+VLA EK+ T+ LL+ S+   EK+ +IDEH+ CA++G+ +DA  L+ +AR+ +Q   + Y EPM VE     +CD    +    +    RPFGVS L AG D + G  LY +DPSG F    A +I G  S+ A S L+  YK D++L+EA  +A
Sbjct:    5 YDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGIVLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQEPMPVEQLVSQICDTKQGY---TQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKATSIGGENSQVAQSVLRSNYKPDISLKEALQLA 194          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 86/190 (45.26%), Postives = 113/190 (59.47%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADS-------SLQEQYKQDL 626
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL+++  VVLA   +  S L   S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG +++  A AIGS S+ A +       S QE  K+DL
Sbjct:    3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKA---QVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDL 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 76/185 (41.08%), Postives = 111/185 (60.00%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENG-PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQE 638
            YDR V  +SP+G L QVEYA EA++ GST +GL+T   +V+ VEKR    L E   V KI  +D+H+    SGL ADAR LV  A++E Q+HR ++ +P TVE  T+ +  L   + + +     RPFG+S L+ G DE+G P L+ TDPSG F++  A   G  S+     +++   + LT+ +
Sbjct:    5 YDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDLQEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGR---RPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEKHADEILTIAD 186          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA1A_ARATH (Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1 PE=1 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.642e-34
Identity = 81/180 (45.00%), Postives = 111/180 (61.67%), Query Frame = 3
Query:   78 RTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYK 617
            R +YD  V T+SP GRLFQVEYA+EA+K GS AIGL+++  VVLA   +  S L   S   KI ++D+HIG A++GL AD R L  + R E+ NH F+Y  P+ V      L D A       + S  RP+GV LL+ G DE+G  LYY  PSG +++  A AIGS S+ A + L+ +++
Sbjct:    3 RNQYDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKA---QVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 177          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA4_SCHPO (Probable proteasome subunit alpha type-4 OS=Schizosaccharomyces pombe GN=SPAC13C5.01c PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.815e-33
Identity = 79/191 (41.36%), Postives = 113/191 (59.16%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLE-PSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDE-NGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YD     FSPEGRL+QVEYA+EAI     A+G+  K+G+VLA EK++TS LLE   S EK+  I +++ CA++GL ADA  L+ +AR   Q +  ++ E M  E   + +CDL   +    +    RPFGVS L AG D   G  L+ ++PSG +    A +IG  S    S ++++YK D+ L EA  +A
Sbjct:    5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCAVAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGY---TQYGGLRPFGVSFLYAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKDDINLDEASAMA 192          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.815e-33
Identity = 75/187 (40.11%), Postives = 110/187 (58.82%), Query Frame = 3
Query:   81 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEA 641
            T YD    TFSP+GR+FQVEYA +A+    TA+GL+ K+GVVLAVEK + S +L P++  +I  +D H G AMSGL+AD R LV   R E  ++R  YG  ++ +   + L +    +         RPFG S+++   D+NGP LY  +PSG  W     AIG G+  A + +++    ++T +EA
Sbjct:    4 TGYDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLY---SLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREA 187          
BLAST of FC923112 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.371e-33
Identity = 76/191 (39.79%), Postives = 118/191 (61.78%), Query Frame = 3
Query:   87 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVSLLIAGSD--ENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYKQDLTLQEAETIA 653
            YDR ++ FSP+GRL QVEY  EA++ G+TAI L+  E +V+ VE++    L   S+ +KI  +D H+  A +GL ADAR L++ ARVE QNH+ +  +P+++E  T+ +  +  ++    +    RPFGVS LIAG D  +N P +Y T+P+G +    A AIG  S+ A   L++ +K+ L+  E   +A
Sbjct:    4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKY---TQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLA 191          
The following BLAST results are available for this feature:
BLAST of FC923112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197
Match NameE-valueIdentityDescription
PSA7A_ORYSI3.308e-3544.69Proteasome subunit alpha type-7-A OS=Oryza sativa ... [more]
PSA7B_ORYSJ4.321e-3544.44Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA7B_ORYSI4.321e-3544.44Proteasome subunit alpha type-7-B OS=Oryza sativa ... [more]
PSA4_DICDI9.626e-3542.49Proteasome subunit alpha type-4 OS=Dictyostelium d... [more]
PSA1B_ARATH9.626e-3545.26Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA73_DROME1.642e-3441.08Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA1A_ARATH1.642e-3445.00Proteasome subunit alpha type-1-A OS=Arabidopsis t... [more]
PSA4_SCHPO1.815e-3341.36Probable proteasome subunit alpha type-4 OS=Schizo... [more]
PSA3_ACACA1.815e-3340.11Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA7_SCHPO2.371e-3339.79Probable proteasome subunit alpha type-7 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC31701C01EF StrClemenN Citrus clementina cDNA clone C31701C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923112 ID=FC923112; Name=FC923112; organism=Citrus clementina; type=EST; length=654bp
GGCTCTAACACAGTTCCGGTATCAACTCTTAAGCTCAGGTTTCCAGATCC
AATCAGCAACAAAACATGTTCCTTACAAGGACTGAGTATGATAGAGGAGT
GAACACTTTCTCTCCAGAAGGAAGATTGTTTCAGGTCGAATATGCTATTG
AGGCCATTAAGCTGGGTTCAACTGCAATTGGGTTGAAGACGAAAGAAGGG
GTTGTGCTTGCTGTCGAGAAACGCATTACTTCACCACTGCTGGAGCCCAG
CAGCGTGGAGAAGATTATGGAAATTGATGAGCATATAGGATGTGCTATGA
GTGGATTGATTGCTGATGCTCGTACACTTGTTGAACATGCAAGGGTTGAA
ACTCAGAATCATAGATTCTCATATGGTGAGCCAATGACCGTAGAATCTAC
TACACAAGCACTCTGTGACCTGGCGCTACGCTTTGGTGAAGGCGATGAAG
AATCCATGTCTCGACCATTTGGAGTATCCCTTCTTATTGCTGGATCTGAC
GAGAATGGACCTAGCCTGTACTATACAGATCCATCTGGCACATTCTGGCA
ATGCAATGCGAAGGCTATTGGTTCAGGTTCAGAAGGAGCTGACAGTTCTC
TCCAAGAGCAATATAAACAGGATTTAACCCTTCAGGAAGCAGAGACAATT
GCTC
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