FC923113

Overview
NameFC923113
Unique NameFC923113
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC923113_ssr59 microsatellite FC923113_ssr59:59..73. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.586e-36
Identity = 70/114 (61.40%), Postives = 92/114 (80.70%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AA  ERTFIAIKPDGVQRGL+ +II RFE+KGF+LVA+K +  S++  ++HY DLK+RPF+ GL E+++SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGDL + VGR
Sbjct:    2 AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGR 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.908e-36
Identity = 69/113 (61.06%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIA+KPDGVQRGL+ EII RFE+KGF+LVA+K +  S+E  ++HY DLK+RPFF GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AHAERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.028e-35
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ IKPDGVQR L+ EII RFE KGF LV +K++  S E A+KHY   KERPFF  L +F++S PV+AMVW+GEGVI   RK+IGAT+P  +EPGTIRGD  + VGR
Sbjct:    1 MERTFLMIKPDGVQRNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNPLNAEPGTIRGDFGISVGR 111          

HSP 2 Score: 21.557 bits (44), Expect = 1.028e-35
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  111 RNLIHGSDG 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_COLLI (Nucleoside diphosphate kinase OS=Columba livia PE=2 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.294e-35
Identity = 69/114 (60.53%), Postives = 90/114 (78.95%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AA  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K V  S+E  ++HY DLK+RPF+ GL ++++SGP++AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGMKFVHASEELLKQHYIDLKDRPFYPGLVKYMNSGPIVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.339e-35
Identity = 68/111 (61.26%), Postives = 89/111 (80.18%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTFIAIKPDGVQRGL+  II R E +G++LV +K+V  S+E A+ HY + KERPFF+ L +F++SGPV+AMVW+G+GVI   RKLIG T+P ++EPGTIRGD  + +GR
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEAEPGTIRGDFGIDIGR 111          

HSP 2 Score: 21.557 bits (44), Expect = 1.339e-35
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  111 RNLIHGSDG 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_EMENI (Nucleoside diphosphate kinase OS=Emericella nidulans GN=swoH PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 68/110 (61.82%), Postives = 87/110 (79.09%), Query Frame = 1
Query:  346 ERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            E+TFIAIKPDGVQRGL+  IISRFE +GFKL A+K+  PS+   ++HY DLKE+PFF GL  ++ SGP++AMVWEG+ V+  GR ++GAT+P  S PGTIRGD A+ VGR
Sbjct:    4 EQTFIAIKPDGVQRGLVGPIISRFENRGFKLAAMKLTSPSRSLLEQHYSDLKEKPFFPGLVTYMLSGPIVAMVWEGKDVVKTGRTILGATNPLASAPGTIRGDFAIDVGR 113          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_RAT (Nucleoside diphosphate kinase A OS=Rattus norvegicus GN=Nme1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.690e-35
Identity = 68/113 (60.18%), Postives = 89/113 (78.76%), Query Frame = 1
Query:  337 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            A  ERTFIAIKPDGVQRGL+ EII RFE+KGF+LV +K +  S++  ++HY DLK+RPFF+GL +++ SGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 ANSERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFIQASEDLLKEHYIDLKDRPFFSGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 114          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.744e-35
Identity = 68/111 (61.26%), Postives = 87/111 (78.38%), Query Frame = 1
Query:  343 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            MERTF+ +KPDGVQRGL+ ++I RFE KGFKLV +K+V  S+E A++HY   +ERPFF  L EF+ S PV+AMVWEG+G I   RK+IGAT+P ++EPGTIRGD  V +GR
Sbjct:    1 MERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGR 111          

HSP 2 Score: 21.557 bits (44), Expect = 1.744e-35
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 3
Query:  672 KNIIHGSDG 698
            +N+IHGSDG
Sbjct:  111 RNLIHGSDG 119          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 70/114 (61.40%), Postives = 86/114 (75.44%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AA  ERTFI +KPDGVQRGL+ +II RFE+KGFKLVA+K    SKE  +KHY DL  RPFF GL  +++SGPV+ MVWEG  V+  GR+++GAT+P  S PGTIRGD  + VGR
Sbjct:    2 AANKERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGR 115          
BLAST of FC923113 vs. ExPASy Swiss-Prot
Match: NDKA1_XENLA (Nucleoside diphosphate kinase A1 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.207e-35
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 1
Query:  334 AAEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKIVVPSKEFAQKHYHDLKERPFFNGLCEFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSEPGTIRGDLAVVVGR 675
            AA  ERTFIAIKPDGVQRGL+ +II RFE+KGF+LVA+K    S++  ++HY DLK+RPF+ GL E++SSGPV+AMVWEG  V+  GR ++G T+P  S+PGTIRGD  + VGR
Sbjct:    2 AANKERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFQQASQDLLRQHYIDLKDRPFYPGLVEYMSSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGR 115          
The following BLAST results are available for this feature:
BLAST of FC923113 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKA2_XENLA7.586e-3661.40Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDKB_PIG9.908e-3661.06Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDK_MICAN1.028e-3563.06Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_COLLI1.294e-3560.53Nucleoside diphosphate kinase OS=Columba livia PE=... [more]
NDK_SYNJB1.339e-3561.26Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_EMENI1.690e-3561.82Nucleoside diphosphate kinase OS=Emericella nidula... [more]
NDKA_RAT1.690e-3560.18Nucleoside diphosphate kinase A OS=Rattus norvegic... [more]
NDK_SYNP21.744e-3561.26Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKA_DROME2.207e-3561.40Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDKA1_XENLA2.207e-3561.40Nucleoside diphosphate kinase A1 OS=Xenopus laevis... [more]

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Properties
Property NameValue
Genbank descriptionC31701C02EF StrClemenN Citrus clementina cDNA clone C31701C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923113 ID=FC923113; Name=FC923113; organism=Citrus clementina; type=EST; length=699bp
GGTTGCTCTCTGTTGGGCTTACTTACTCTCTTGTTTCAGCTTAAATTTGA
GTCTTGAGAATCCAATCCAATCCCAAGTATGAGCTCTCAGATAGTTAGAT
CTGCTTCTAGAGCCGCAACCGCAAGGTCTCTGCTTTCAGCTTCCAAGAAT
TCGCGCTTTTACTCCGAAGGGCGAGCTGTATCTGCTGCAGCGGCAGTTAC
ATTCAGTGGGAAGTTGCCTTATCTTGTTTCAAGTTTTGGGAGGGCTGGTT
CCTCAACTGCATCTCGATCATGGCTCTCGGGAGCCATTGCAATTCCTGCT
GCAGCTTACATGCTCCAGGAGCAGGAAGTACATGCTGCAGAGATGGAACG
CACTTTCATTGCCATCAAGCCAGATGGGGTGCAAAGAGGACTGATTTCAG
AAATCATCTCTCGCTTTGAGCGCAAAGGCTTTAAGCTTGTGGCCATTAAG
ATAGTAGTTCCATCAAAAGAGTTTGCACAAAAACATTATCATGATCTGAA
GGAAAGACCCTTCTTTAATGGCCTGTGCGAGTTCCTTAGCTCTGGTCCAG
TCATTGCCATGGTATGGGAAGGAGAGGGAGTTATTACGTATGGTCGCAAA
CTCATTGGAGCCACAGATCCTCAGAAATCAGAACCTGGAACAATCAGAGG
CGATCTAGCTGTTGTTGTTGGAAGAACATCATTCATGGAAGTGATGGCC
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