FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DICDI (Eukaryotic translation initiation factor 3 subunit I OS=Dictyostelium discoideum GN=eif3i PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.587e-37
Identity = 80/181 (44.20%), Postives = 119/181 (65.75%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPI ++ HERP+T + +N++GDLLF  AKD   ++W+  NGER+G+Y+   G V+  DVS+DS  LIT SAD  A++W+V +G QL + +F+  ARS++F+ GDK  ++ TD  M   + IHV    +D   +  +S   L  PQ +I +A WGPLN+TI ++ ED  VRI+ TE  +L+
Sbjct:    1 MRPISLRLHERPITQVLFNREGDLLFVAAKDKLVSLWYTTNGERIGSYQC-GGVVYSIDVSQDSKYLITASADAKARVWDVSSGRQLDSTDFEVSARSIEFSQGDKQILVVTDQVMGCQAKIHVFDFDKDEVRKLNKS-YTLPSPQCKITQATWGPLNKTIFASCEDGAVRIYCTEKRELI 179          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROGR (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila grimshawi GN=Trip1 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 75/180 (41.67%), Postives = 107/180 (59.44%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            MRP++++GHER +T +KYN++GDLLFS +KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T KLW+VE G  + +    S  R+ +F+     A  +TD  M  N  + +  +   D      E  L +   + +I    WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MRPLMLQGHERSITQIKYNREGDLLFSSSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKLWDVEYGTVIASIATKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSTLSEQEPTLRIPMVESKITSMQWGPLDETIITGHDNGNIAIWDVRKGQ 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_XENTR (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus tropicalis GN=eif3i PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 75/182 (41.21%), Postives = 111/182 (60.99%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV  D+  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP   +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+++
Sbjct:    1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYSGHTGAVWCVDVDWDTRHVLSGSADNSCRLWDCETGKQLALLETNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFIDL-RDPTQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNQYSAKSGEIV 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_XENLA (Eukaryotic translation initiation factor 3 subunit I OS=Xenopus laevis GN=eif3i PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.179e-36
Identity = 74/182 (40.66%), Postives = 112/182 (61.54%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL++GHER +T +KYN+DGDLLF+ AKD    VW++ NGERLGTY GH GAVWC DV  ++  +++GSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+  +  E  + +   + +I  AVWGPL   II+  E+  +  +  ++G+++
Sbjct:    1 MRPILLQGHERSITQIKYNRDGDLLFTVAKDPVVNVWYSVNGERLGTYNGHTGAVWCVDVDWETRHVLSGSADNSCRLWDCETGKQLALLQTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFIDL-RDPSQIEDNEPYMKIPCSESKITSAVWGPLGENIIAGHENGELNHYSAKSGEIV 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DANRE (Eukaryotic translation initiation factor 3 subunit I OS=Danio rerio GN=eif3i PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.507e-35
Identity = 73/182 (40.11%), Postives = 110/182 (60.44%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLFS AKD    VW++ NGERLGTY GH GAVWC DV  D+  ++TGSAD + +LW+ ETG QL      S  R+  F     + + +TD  M     ++   + RDP   +  +  + +   + +I  AVWGPL   +I+  E+  +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFSVAKDPIANVWYSVNGERLGTYNGHTGAVWCVDVDWDTKNVLTGSADNSCRLWDCETGKQLALLETSSAVRTCGFDFSGNIIMFSTDKQMGYQCFLNYYDL-RDPQQIEDNQPYISVPCSESKITSAVWGPLGEFVIAGHENGEINQFSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROMO (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila mojavensis GN=Trip1 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.968e-35
Identity = 72/177 (40.68%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  ++  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  N  + +  + R+      E    L+ P  + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWETRKLITGAGDMTTKIWDVEYGTVIASIAAKSSVRTCNFSFSGNQAAYSTDKAMGQNCELFIIDV-RNADSSLSEQAPTLRIPMVESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 176          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_RABIT (Eukaryotic translation initiation factor 3 subunit I OS=Oryctolagus cuniculus GN=EIF3I PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 75/182 (41.21%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G++L
Sbjct:    1 MRPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_CHAGB (Eukaryotic translation initiation factor 3 subunit I OS=Chaetomium globosum GN=TIF34 PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.571e-35
Identity = 80/182 (43.96%), Postives = 109/182 (59.89%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDF-AVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER LT +KYN DGDL+FS +KD    VWFA NGERLGTYRGH GA+W  DV   S  L +GSAD T +LW+++TG  L T++F +  + V+F   G KL  +T      L + + +       A+Q  E V+ +   + +   A W  L++ II+  ED  V  +D +TG LL
Sbjct:    1 MRPILLAGHERALTQIKYNPDGDLIFSVSKDQQICVWFAHNGERLGTYRGHQGAIWTIDVDPTSTILASGSADNTIRLWDIKTGKCLKTWDFPTAVKRVEFNEDGTKLLGVTEKRMGHLGTIVVLDIKIDVEAEQSDEKVMTIVCDESKATVAGWSYLSKYIIAGHEDGSVSQYDGKTGDLL 182          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROYA (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila yakuba GN=Trip1 PE=3 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 3.357e-35
Identity = 71/176 (40.34%), Postives = 106/176 (60.23%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFLIDVRNADSSLSEQEPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 176          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_RAT (Eukaryotic translation initiation factor 3 subunit I OS=Rattus norvegicus GN=Eif3i PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVL 181          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_DICDI3.587e-3744.20Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROGR7.991e-3741.67Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_XENTR3.037e-3641.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_XENLA5.179e-3640.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DANRE1.507e-3540.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROMO1.968e-3540.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_RABIT2.571e-3541.21Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_CHAGB2.571e-3543.96Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROYA3.357e-3540.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_RAT5.727e-3540.66Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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