FC923115

Overview
NameFC923115
Unique NameFC923115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
StrClemenNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_PONAB (Eukaryotic translation initiation factor 3 subunit I OS=Pongo abelii GN=EIF3I PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGSIIMFSTDKQMGYQCFVSFFDL-RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_HUMAN (Eukaryotic translation initiation factor 3 subunit I OS=Homo sapiens GN=EIF3I PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIDNNEPYMKIPCNDSKITSAVWGPLGECIIAGHESGELNQYSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROAN (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila ananassae GN=Trip1 PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 5.727e-35
Identity = 72/177 (40.68%), Postives = 107/177 (60.45%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++GHER +T +KYN++GDLLFSC+KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  + R+      E    L+ P  + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MLQGHERSITQIKYNREGDLLFSCSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKIWDVEYGTIIASIPSKSSVRTSNFSFSGNQAAYSTDKAMGQSCELFIIDV-RNADSSLAEQTPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 176          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_MOUSE (Eukaryotic translation initiation factor 3 subunit I OS=Mus musculus GN=Eif3i PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 73/182 (40.11%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   +I+  E   +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIDSNEPYMKIPCNDSKITSAVWGPLGECVIAGHESGELNQYSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_BOVIN (Eukaryotic translation initiation factor 3 subunit I OS=Bos taurus GN=EIF3I PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.479e-35
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL     +S  R+  F  G  + + +TD  M     +    + RDP+     E  + +     +I  AVWGPL   II+  E   +  +  ++G++L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYMGHTGAVWCVDADWDTKHVLTGSADNSCRLWDCETGKQLALLKTNSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIDSNEPYMRIPCNDSKITSAVWGPLGECIIAGHEGGELNQYSAKSGEVL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_TAEGU (Eukaryotic translation initiation factor 3 subunit I OS=Taeniopygia guttata GN=EIF3I PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 74/182 (40.66%), Postives = 108/182 (59.34%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPAD-QGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            M+PIL++GHER +T +KYN++GDLLF+ AKD    VW++ NGERLGTY GH GAVWC D   D+  ++TGSAD + +LW+ ETG QL      S  R+  F  G  + + +TD  M     +    + RDP+  +  E  + +     +I  AVWGPL   II+  E+  +  +  ++G+ L
Sbjct:    1 MKPILLQGHERSITQIKYNREGDLLFTVAKDPIVNVWYSVNGERLGTYNGHTGAVWCVDADWDTRHVLTGSADNSCRLWDCETGKQLALVKTSSAVRTCGFDFGGNIIMFSTDKQMGYQCFVSFFDL-RDPSQIENNEPYMKIPCSDSKITSAVWGPLGEFIIAGHENGELNQFSAKSGEQL 181          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROVI (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila virilis GN=Trip1 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 9.768e-35
Identity = 71/176 (40.34%), Postives = 105/176 (59.66%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIAR-DPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++GHER +T +KYN++GDLLFS +KD  P VW++ NGERLGTY GH GAVWC DV  +S  LITG+ D T K+W+VE G  + +    S  R+ +F+     A  +TD  M  N  + +  +   D +    E  L +   + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MLQGHERSITQIKYNREGDLLFSSSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITGAGDMTTKIWDVEYGTVIASIPTKSSVRTSNFSFSGNQAAYSTDKAMGQNCELFIIDVRNADSSLSEQEPTLRIPMVESKITSMLWGPLDETIITGHDNGNIAIWDIRKGQ 176          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_NEUCR (Eukaryotic translation initiation factor 3 subunit I OS=Neurospora crassa GN=tif-34 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 78/182 (42.86%), Postives = 106/182 (58.24%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAV-GDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGKLL 655
            MRPIL+ GHER LT +KYN+DGDLLFS +KD    VWFA NGERLGTY GH GA+W  DV   S  L +GSAD T +LW ++TG  L T++F +  + V+F+  G KL  +T      L + + +       A+Q  E  + +     +   A W  L++ II+  ED  V  +D + G LL
Sbjct:    1 MRPILLSGHERALTQIKYNRDGDLLFSVSKDQQICVWFAHNGERLGTYHGHQGAIWTIDVDPTSTILASGSADNTIRLWEIKTGRLLKTWDFPTAVKRVEFSEDGSKLLGVTEKRMGHLGTIVVLDIKLDVDAEQSDEKAMTIVCEDSKATVAGWSYLSKYIIAGHEDGSVSQFDGKNGDLL 182          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_BOMMO (Eukaryotic translation initiation factor 3 subunit I OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.666e-34
Identity = 71/180 (39.44%), Postives = 104/180 (57.78%), Query Frame = 2
Query:  113 MRPILMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHV-KRIARDPADQGGESVLILKGPQGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            M+P++++GH+R +T +KYN++GDLLFS AKD  P VW++ NGERLGT+ GH G +WC DV   S+ LITG  D + +LW++ETG  + T   +S  R+ +F+     A  TTD  M     + V      D    G   +L  +    ++   +WG L+ TII+  E   +  WD  TGK
Sbjct:    1 MKPLMLQGHQRAITQIKYNREGDLLFSAAKDSKPNVWWSLNGERLGTFNGHGGVIWCLDVDWQSINLITGGGDSSCRLWDLETGKNIATLKSNSSVRTCNFSYSAYQAAYTTDKAMGHPCEVFVIDTRTIDETVSGQAPILKWEITDSKVTSMIWGSLDETIITGHEAGDLIQWDLRTGK 180          
BLAST of FC923115 vs. ExPASy Swiss-Prot
Match: EIF3I_DROWI (Eukaryotic translation initiation factor 3 subunit I OS=Drosophila willistoni GN=Trip1 PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.331e-34
Identity = 72/177 (40.68%), Postives = 105/177 (59.32%), Query Frame = 2
Query:  125 LMKGHERPLTYLKYNKDGDLLFSCAKDHTPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMTLITGSADQTAKLWNVETGAQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELNSAIHVKRIARDPADQGGESVLILKGP--QGRINRAVWGPLNRTIISAGEDAIVRIWDTETGK 649
            +++GHER +T +KYN++GDLLFS +KD  P VW++ NGERLGTY GH GAVWC DV  +S  LIT   D TAKLW+VE G  + +    S  R+ +F+     A  +TD  M  +  + +  + R+      E    L+ P  + +I   +WGPL+ TII+  ++  + IWD   G+
Sbjct:    1 MLQGHERSITQIKYNREGDLLFSSSKDQKPNVWYSLNGERLGTYDGHQGAVWCLDVDWESRKLITAGGDMTAKLWDVEYGTVIASIPTKSSVRTCNFSFSGNQAAYSTDKTMGQSCELFIIDV-RNADSTLSEQTPTLRIPMTESKITSMLWGPLDETIITGHDNGNIAIWDVRKGQ 176          
The following BLAST results are available for this feature:
BLAST of FC923115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
EIF3I_PONAB5.727e-3540.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_HUMAN5.727e-3540.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROAN5.727e-3540.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_MOUSE7.479e-3540.11Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_BOVIN7.479e-3540.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_TAEGU9.768e-3540.66Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROVI9.768e-3540.34Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_NEUCR1.666e-3442.86Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_BOMMO1.666e-3439.44Eukaryotic translation initiation factor 3 subunit... [more]
EIF3I_DROWI6.331e-3440.68Eukaryotic translation initiation factor 3 subunit... [more]

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Properties
Property NameValue
Genbank descriptionC31701C04EF StrClemenN Citrus clementina cDNA clone C31701C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC923115 ID=FC923115; Name=FC923115; organism=Citrus clementina; type=EST; length=662bp
GATCTCTCCCACTAGCTTTGCTTTGCGATCTCAAGGCTTTCCAACGCTCC
ACCGGAAACTCCATTCGTCGCGGAATTCAGGAAAACAGAGAAAGAAGAAG
AAAAAAGCAAGCATGAGACCAATTTTGATGAAAGGCCATGAGAGGCCTTT
AACATATCTTAAATACAACAAAGACGGAGATCTGCTCTTTTCATGTGCTA
AGGATCACACACCCACCGTTTGGTTCGCTGACAACGGCGAGCGTCTTGGC
ACATACCGTGGCCACAACGGCGCCGTTTGGTGCTGCGATGTTTCAAGAGA
TTCGATGACGCTAATAACCGGGAGTGCTGACCAGACGGCGAAGCTATGGA
ATGTTGAAACAGGGGCTCAGTTGTTCACATTCAATTTTGATTCTCCAGCT
AGGTCTGTCGACTTTGCTGTTGGTGATAAGCTTGCTGTGATTACTACTGA
TCCTTTCATGGAATTAAACTCAGCCATTCATGTCAAACGCATTGCAAGAG
ATCCTGCTGATCAGGGTGGTGAATCTGTGCTTATTCTAAAAGGCCCTCAG
GGAAGAATAAACAGAGCAGTTTGGGGACCGCTAAACAGGACTATCATTAG
TGCTGGAGAAGATGCTATAGTTCGTATTTGGGATACTGAGACAGGGAAAC
TGCTTNAAGAGT
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